Variant report

Variant	rs17099366
Chromosome Location	chr14:33093521-33093522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10132525	1.00[AMR][1000 genomes]
rs10133509	1.00[AMR][1000 genomes]
rs10138956	1.00[AMR][1000 genomes]
rs10142787	1.00[AMR][1000 genomes]
rs10143444	1.00[AMR][1000 genomes]
rs10145507	1.00[AMR][1000 genomes]
rs10148871	1.00[AMR][1000 genomes]
rs10149757	1.00[AMR][1000 genomes]
rs11844811	0.82[ASW][hapmap]
rs17099373	1.00[MEX][hapmap]
rs28431292	1.00[AMR][1000 genomes]
rs28444599	1.00[AMR][1000 genomes]
rs28834510	1.00[AMR][1000 genomes]
rs28871152	1.00[AMR][1000 genomes]
rs7157153	1.00[AMR][1000 genomes]
rs73264819	1.00[AMR][1000 genomes]
rs73264836	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:33078800-33097000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:33078800-33098200	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:33078800-33102600	Weak transcription	Aorta	Aorta
5	chr14:33080000-33104200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:33089600-33102600	Weak transcription	Psoas Muscle	Psoas
7	chr14:33091000-33095000	Weak transcription	HSMMtube	muscle
8	chr14:33091800-33093600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:33092200-33093600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:33092200-33093600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:33092200-33096600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:33092400-33093600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:33092400-33093800	Flanking Active TSS	NHDF-Ad	bronchial
14	chr14:33092400-33102800	Weak transcription	Right Ventricle	heart
15	chr14:33092800-33093600	Enhancers	NHLF	lung
16	chr14:33093000-33096200	Weak transcription	Fetal Heart	heart
17	chr14:33093200-33098200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:33093200-33098200	Weak transcription	Brain Substantia Nigra	brain
19	chr14:33093200-33102800	Weak transcription	Left Ventricle	heart
20	chr14:33093200-33103600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:33093200-33104200	Weak transcription	HSMM	muscle
22	chr14:33093400-33097000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links