Variant report

Variant	rs28431292
Chromosome Location	chr14:32970702-32970703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10132525	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133509	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142787	1.00[AMR][1000 genomes]
rs10143444	1.00[AMR][1000 genomes]
rs10145507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148871	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149757	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099366	1.00[AMR][1000 genomes]
rs28444599	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28834510	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28871152	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58081373	1.00[AMR][1000 genomes]
rs7157153	1.00[AMR][1000 genomes]
rs73264819	1.00[AMR][1000 genomes]
rs73264836	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32965400-32976400	Weak transcription	HSMM	muscle
2	chr14:32966400-32976800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:32966600-32971200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:32966600-32976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:32967200-32978400	Weak transcription	Fetal Muscle Leg	muscle
6	chr14:32968000-32975600	Weak transcription	Left Ventricle	heart
7	chr14:32968200-32978400	Weak transcription	Psoas Muscle	Psoas
8	chr14:32969000-32971200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr14:32969200-32971600	Enhancers	Colon Smooth Muscle	Colon
10	chr14:32969400-32970800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:32969400-32972400	Enhancers	Brain Cingulate Gyrus	brain
12	chr14:32969400-32972800	Enhancers	Brain Hippocampus Middle	brain
13	chr14:32969600-32970800	Enhancers	Osteobl	bone
14	chr14:32969600-32971000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr14:32969800-32971000	Weak transcription	Brain Anterior Caudate	brain
16	chr14:32969800-32971000	Weak transcription	Brain Substantia Nigra	brain
17	chr14:32969800-32971800	Weak transcription	Fetal Lung	lung
18	chr14:32970200-32971000	Enhancers	Fetal Heart	heart
19	chr14:32970200-32975600	Weak transcription	HSMMtube	muscle
20	chr14:32970200-32978800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:32970200-32979000	Weak transcription	Right Atrium	heart
22	chr14:32970400-32970800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr14:32970400-32971800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:32970600-32971000	Enhancers	Aorta	Aorta
25	chr14:32970600-32971800	Active TSS	Right Ventricle	heart
26	chr14:32970600-32972000	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links