Variant report

Variant	rs10148871
Chromosome Location	chr14:32982609-32982610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32851675..32852435-chr14:32982550..32983471,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10132525	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142787	1.00[AMR][1000 genomes]
rs10143444	1.00[AMR][1000 genomes]
rs10145507	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149757	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099366	1.00[AMR][1000 genomes]
rs28431292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28444599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28834510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28871152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58081373	1.00[AMR][1000 genomes]
rs7157153	1.00[AMR][1000 genomes]
rs73264819	1.00[AMR][1000 genomes]
rs73264836	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32975600-32983400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:32979000-32983400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:32979000-32984200	Enhancers	HSMMtube	muscle
4	chr14:32979200-32984000	Enhancers	Brain Hippocampus Middle	brain
5	chr14:32979200-32984200	Enhancers	Brain Anterior Caudate	brain
6	chr14:32979200-32984200	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:32979200-32984200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr14:32979200-32984200	Enhancers	Brain Substantia Nigra	brain
9	chr14:32979200-32984200	Enhancers	Fetal Heart	heart
10	chr14:32979200-32986600	Weak transcription	Right Ventricle	heart
11	chr14:32979400-32985600	Enhancers	Hela-S3	cervix
12	chr14:32980200-32983200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr14:32980400-32983800	Weak transcription	Fetal Intestine Small	intestine
14	chr14:32980400-33002000	Weak transcription	Aorta	Aorta
15	chr14:32980600-32984000	Weak transcription	Small Intestine	intestine
16	chr14:32981200-32983400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:32981200-32984200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:32981200-32984200	Enhancers	HSMM	muscle
19	chr14:32981400-32983600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:32981600-32982800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:32981600-32982800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:32981600-32982800	Enhancers	Fetal Kidney	kidney
23	chr14:32981600-32982800	Enhancers	Fetal Stomach	stomach
24	chr14:32981600-32983400	Enhancers	Rectal Smooth Muscle	rectum
25	chr14:32981600-32983600	Enhancers	Brain Angular Gyrus	brain
26	chr14:32981600-32983800	Enhancers	Colon Smooth Muscle	Colon
27	chr14:32981600-32983800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr14:32981600-32983800	Enhancers	Osteobl	bone
29	chr14:32981600-32984200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:32981600-32984400	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr14:32981600-32984800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr14:32981800-32982800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:32981800-32982800	Enhancers	NHDF-Ad	bronchial
34	chr14:32981800-32983000	Enhancers	HMEC	breast
35	chr14:32981800-32983400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:32981800-32984200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr14:32981800-32984400	Enhancers	Fetal Muscle Leg	muscle
38	chr14:32982200-32982800	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr14:32982200-32982800	Enhancers	Ovary	ovary
40	chr14:32982200-32982800	Enhancers	Stomach Smooth Muscle	stomach
41	chr14:32982200-32983000	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr14:32982200-32983000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr14:32982200-32983000	Enhancers	A549	lung
44	chr14:32982200-32983400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:32982200-32983400	Enhancers	NH-A	brain
46	chr14:32982200-32983600	Enhancers	NHEK	skin
47	chr14:32982200-32983600	Enhancers	NHLF	lung
48	chr14:32982200-32983800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr14:32982200-32984200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:32982200-32984200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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