Variant report

Variant	rs10132525
Chromosome Location	chr14:32984828-32984829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10133509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142787	1.00[AMR][1000 genomes]
rs10143444	1.00[AMR][1000 genomes]
rs10145507	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148871	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149757	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099366	1.00[AMR][1000 genomes]
rs28431292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28444599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28834510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28871152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58081373	1.00[AMR][1000 genomes]
rs7157153	1.00[AMR][1000 genomes]
rs73264819	1.00[AMR][1000 genomes]
rs73264836	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32979200-32986600	Weak transcription	Right Ventricle	heart
2	chr14:32979400-32985600	Enhancers	Hela-S3	cervix
3	chr14:32980400-33002000	Weak transcription	Aorta	Aorta
4	chr14:32983600-32985000	Weak transcription	Brain Angular Gyrus	brain
5	chr14:32983600-33006000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:32984200-32985400	Weak transcription	Fetal Heart	heart
7	chr14:32984200-32986600	Weak transcription	Brain Substantia Nigra	brain
8	chr14:32984200-32986600	Weak transcription	Left Ventricle	heart
9	chr14:32984200-32986600	Weak transcription	Psoas Muscle	Psoas
10	chr14:32984400-33004800	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:32984800-32985000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr14:32984800-32985200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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