Variant report

Variant	rs17100075
Chromosome Location	chr1:77726109-77726110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77725962..77727892-chr1:77729929..77731695,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10493536	0.92[CHB][hapmap];0.83[GIH][hapmap]
rs10493537	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10493602	0.82[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11162319	0.92[CHB][hapmap];0.83[GIH][hapmap]
rs1167198	0.92[CHB][hapmap];0.83[GIH][hapmap]
rs1167205	0.92[CHB][hapmap];0.80[GIH][hapmap]
rs12062754	0.92[CHB][hapmap]
rs12070567	0.83[CHB][hapmap]
rs12076479	0.92[CHB][hapmap];0.83[GIH][hapmap]
rs12079185	0.91[CHB][hapmap];0.83[GIH][hapmap]
rs12079234	0.91[CHB][hapmap];0.83[GIH][hapmap]
rs1616272	0.92[CHB][hapmap]
rs1670611	0.91[CHB][hapmap]
rs1670612	0.92[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs1670617	0.92[CHB][hapmap];0.83[GIH][hapmap]
rs1670618	0.89[CHB][hapmap]
rs17099885	1.00[ASW][hapmap]
rs17099983	1.00[ASW][hapmap]
rs17100133	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17100185	0.92[CHB][hapmap];0.80[AMR][1000 genomes]
rs17100204	0.92[CHB][hapmap];0.80[AMR][1000 genomes]
rs17100317	1.00[ASW][hapmap];0.92[CHB][hapmap];1.00[AFR][1000 genomes]
rs17100319	1.00[ASW][hapmap];0.92[CHB][hapmap];0.82[GIH][hapmap];1.00[AFR][1000 genomes]
rs17100422	0.83[CHB][hapmap]
rs17100440	0.84[CHB][hapmap]
rs1721165	0.92[CHB][hapmap];0.83[GIH][hapmap]
rs1779177	0.81[CHB][hapmap]
rs1779178	0.92[CHB][hapmap]
rs2054017	0.92[CHB][hapmap];0.83[GIH][hapmap]
rs2054018	0.92[CHB][hapmap]
rs2602953	0.92[CHB][hapmap];0.83[GIH][hapmap]
rs2815313	0.92[CHB][hapmap];0.83[GIH][hapmap]
rs3962875	1.00[ASW][hapmap];0.92[CHB][hapmap];0.82[GIH][hapmap];0.83[TSI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4033035	0.92[CHB][hapmap]
rs4033036	0.91[CHB][hapmap]
rs4033037	0.92[CHB][hapmap]
rs4949653	0.84[CHB][hapmap]
rs6661765	0.92[CHB][hapmap]
rs6665543	0.92[CHB][hapmap]
rs6669724	0.92[CHB][hapmap];0.86[GIH][hapmap]
rs6680763	0.92[CHB][hapmap]
rs6683829	0.92[CHB][hapmap];0.86[GIH][hapmap]
rs6698996	0.92[CHB][hapmap]
rs6703688	0.92[CHB][hapmap]
rs721514	0.92[CHB][hapmap]
rs7511768	0.81[CHB][hapmap]
rs7531431	0.92[CHB][hapmap]
rs7534033	0.92[CHB][hapmap];0.85[GIH][hapmap]
rs7537603	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432398	chr1:77707391-77740836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17100075	PIGK	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77724200-77727000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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