Variant report

Variant	rs17100105
Chromosome Location	chr12:64537592-64537593
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11832841	0.82[ASN][1000 genomes]
rs11835401	0.82[ASN][1000 genomes]
rs11835930	0.82[ASN][1000 genomes]
rs11838032	0.82[ASN][1000 genomes]
rs17100093	0.82[ASN][1000 genomes]
rs17100102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35994401	0.82[ASN][1000 genomes]
rs3803105	0.82[ASN][1000 genomes]
rs57729579	0.82[ASN][1000 genomes]
rs59228761	0.82[ASN][1000 genomes]
rs59329353	0.82[ASN][1000 genomes]
rs59776688	0.82[ASN][1000 genomes]
rs73321318	0.82[ASN][1000 genomes]
rs73321360	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74099279	0.82[ASN][1000 genomes]
rs74099280	0.82[ASN][1000 genomes]
rs74099281	0.82[ASN][1000 genomes]
rs789734	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs789735	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64498400-64538400	Weak transcription	Small Intestine	intestine
2	chr12:64511200-64539400	Weak transcription	HepG2	liver
3	chr12:64522200-64541200	Weak transcription	Colonic Mucosa	Colon
4	chr12:64522400-64541200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:64522800-64540800	Weak transcription	Fetal Kidney	kidney
6	chr12:64524400-64541200	Weak transcription	Gastric	stomach
7	chr12:64528000-64538400	Weak transcription	Fetal Heart	heart
8	chr12:64528000-64540800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:64528000-64541200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:64528000-64541400	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:64528600-64540400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:64531600-64554400	Weak transcription	NH-A	brain
13	chr12:64533800-64541200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr12:64534600-64538000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr12:64535400-64537600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:64535400-64537600	Strong transcription	Fetal Intestine Small	intestine
17	chr12:64535400-64537600	Strong transcription	Pancreas	Pancrea
18	chr12:64535400-64537800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr12:64535400-64538400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr12:64535400-64539600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:64535400-64539600	Strong transcription	Fetal Stomach	stomach
22	chr12:64535400-64540000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:64535400-64540400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr12:64535400-64541400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr12:64535400-64542400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:64535600-64537600	Strong transcription	Left Ventricle	heart
27	chr12:64535600-64537800	Strong transcription	Fetal Lung	lung
28	chr12:64535600-64537800	Strong transcription	Ovary	ovary
29	chr12:64535600-64537800	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr12:64535600-64538000	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr12:64535600-64538000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr12:64535600-64538000	Strong transcription	HMEC	breast
33	chr12:64535600-64538200	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr12:64535600-64539800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr12:64535600-64540000	Strong transcription	Fetal Intestine Large	intestine
36	chr12:64535600-64540200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr12:64535600-64540400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr12:64535600-64540400	Strong transcription	NHDF-Ad	bronchial
39	chr12:64535600-64540600	Strong transcription	Fetal Brain Female	brain
40	chr12:64535600-64540800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr12:64535600-64541000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr12:64535600-64541400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr12:64535600-64541400	Strong transcription	HSMMtube	muscle
44	chr12:64535800-64537800	Strong transcription	Aorta	Aorta
45	chr12:64535800-64537800	Strong transcription	Brain Germinal Matrix	brain
46	chr12:64535800-64537800	Strong transcription	Hela-S3	cervix
47	chr12:64535800-64539800	Strong transcription	Fetal Muscle Leg	muscle
48	chr12:64535800-64540400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr12:64535800-64540400	Strong transcription	Osteobl	bone
50	chr12:64536000-64537600	Strong transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links