Variant report

Variant	rs17102069
Chromosome Location	chr12:66479706-66479707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:66478426..66481404-chr12:66482324..66484418,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10506476	1.00[EUR][1000 genomes]
rs10506477	1.00[EUR][1000 genomes]
rs1058981	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs11176026	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11176027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1152905	1.00[EUR][1000 genomes]
rs1152910	1.00[EUR][1000 genomes]
rs1168738	1.00[EUR][1000 genomes]
rs1168740	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs1168741	1.00[EUR][1000 genomes]
rs1168746	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs1168764	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs1168767	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs1168773	1.00[EUR][1000 genomes]
rs1179916	1.00[EUR][1000 genomes]
rs12099497	1.00[EUR][1000 genomes]
rs1617632	1.00[EUR][1000 genomes]
rs17102109	1.00[EUR][1000 genomes]
rs17102115	1.00[EUR][1000 genomes]
rs1797400	1.00[EUR][1000 genomes]
rs1946750	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs6581665	0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7307987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7487759	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv899213	chr12:66389968-66500036	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832446	chr12:66393863-66501484	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1049537	chr12:66403269-66606174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66468800-66486000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:66479600-66482200	Enhancers	HepG2	liver

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