Variant report

Variant	rs17102223
Chromosome Location	chr14:65320260-65320261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17102244	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951496	0.85[EUR][1000 genomes]
rs56327757	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726248	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726253	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72726254	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65315400-65324600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:65318200-65321400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:65318400-65322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:65318800-65320400	Enhancers	Left Ventricle	heart
5	chr14:65318800-65320600	Enhancers	K562	blood
6	chr14:65319000-65320400	Enhancers	Right Ventricle	heart
7	chr14:65319000-65320600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr14:65319400-65321400	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:65319400-65324200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr14:65319400-65332600	Weak transcription	Right Atrium	heart
11	chr14:65320000-65320600	Enhancers	Psoas Muscle	Psoas
12	chr14:65320200-65320400	Enhancers	Spleen	Spleen
13	chr14:65320200-65328400	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links