Variant report

Variant	rs17103216
Chromosome Location	chr1:47867846-47867847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12026822	0.85[EUR][1000 genomes]
rs12031011	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12035995	1.00[GIH][hapmap]
rs12039270	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3814005	1.00[GIH][hapmap]
rs4600090	0.85[CEU][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs4926858	0.83[CHB][hapmap];1.00[GIH][hapmap]
rs56017502	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56881474	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6666370	1.00[GIH][hapmap]
rs6690084	0.83[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs7534571	0.81[CEU][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47847600-47872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:47866600-47869200	Enhancers	Fetal Intestine Large	intestine
3	chr1:47866600-47869200	Enhancers	Fetal Intestine Small	intestine
4	chr1:47867400-47868400	Enhancers	Stomach Mucosa	stomach
5	chr1:47867800-47868000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:47867800-47868000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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