Variant report

Variant	rs17103238
Chromosome Location	chr1:79944904-79944905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10493630	0.84[AFR][1000 genomes]
rs11162717	0.81[AFR][1000 genomes]
rs11162718	0.81[AFR][1000 genomes]
rs12074772	0.86[AFR][1000 genomes]
rs12080528	0.81[AFR][1000 genomes]
rs12082455	0.86[AFR][1000 genomes]
rs1494854	0.86[AFR][1000 genomes]
rs1494855	0.86[AFR][1000 genomes]
rs17103256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948572	0.86[AFR][1000 genomes]
rs7520951	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79943600-79951200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:79943800-79951400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:79944200-79951400	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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