Variant report

Variant	rs12074772
Chromosome Location	chr1:79943708-79943709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11162717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11162718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11162725	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11162731	1.00[AMR][1000 genomes]
rs12059891	1.00[AMR][1000 genomes]
rs12062805	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066399	1.00[AMR][1000 genomes]
rs12080528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082165	1.00[AMR][1000 genomes]
rs12082433	1.00[AMR][1000 genomes]
rs12082455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086532	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1494854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1494855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103238	0.86[AFR][1000 genomes]
rs17103256	0.81[AFR][1000 genomes]
rs17103288	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103294	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7520951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79943600-79951200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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