Variant report
| Variant | rs12066399 |
|---|---|
| Chromosome Location | chr1:79982199-79982200 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| ADH5P2 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10493630 | 1.00[AMR][1000 genomes] |
| rs11162717 | 1.00[AMR][1000 genomes] |
| rs11162718 | 1.00[AMR][1000 genomes] |
| rs11162725 | 1.00[AMR][1000 genomes] |
| rs11162731 | 1.00[AMR][1000 genomes] |
| rs12059891 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12062805 | 1.00[AMR][1000 genomes] |
| rs12074772 | 1.00[AMR][1000 genomes] |
| rs12080528 | 1.00[AMR][1000 genomes] |
| rs12082165 | 1.00[AMR][1000 genomes] |
| rs12082433 | 1.00[AMR][1000 genomes] |
| rs12082455 | 1.00[AMR][1000 genomes] |
| rs12086532 | 1.00[AMR][1000 genomes] |
| rs1494854 | 1.00[AMR][1000 genomes] |
| rs1494855 | 1.00[AMR][1000 genomes] |
| rs17103288 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17103294 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72948572 | 1.00[AMR][1000 genomes] |
| rs7520951 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004014 | chr1:79811049-80042309 | Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012004 | chr1:79945395-80096748 | Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv535017 | chr1:79945395-80096748 | Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1012296 | chr1:79945395-80300216 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1005022 | chr1:79950774-80106902 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv546636 | chr1:79964823-80079996 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
