Variant report

Variant	rs12082433
Chromosome Location	chr1:79878702-79878703
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10493630	1.00[AMR][1000 genomes]
rs11162717	1.00[AMR][1000 genomes]
rs11162718	1.00[AMR][1000 genomes]
rs11162725	1.00[AMR][1000 genomes]
rs11162731	1.00[AMR][1000 genomes]
rs12059891	1.00[AMR][1000 genomes]
rs12062805	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066399	1.00[AMR][1000 genomes]
rs12074772	1.00[AMR][1000 genomes]
rs12080528	1.00[AMR][1000 genomes]
rs12082165	1.00[AMR][1000 genomes]
rs12082455	1.00[AMR][1000 genomes]
rs12086532	1.00[AMR][1000 genomes]
rs1494854	1.00[AMR][1000 genomes]
rs1494855	1.00[AMR][1000 genomes]
rs17103288	1.00[AMR][1000 genomes]
rs17103294	1.00[AMR][1000 genomes]
rs72948572	1.00[AMR][1000 genomes]
rs7520951	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830337	chr1:79791879-79913241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv871649	chr1:79807447-79924175	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79877400-79879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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