Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11084065	0.81[YRI][hapmap]
rs1399839	0.88[CEU][hapmap]
rs166653	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs169275	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1697531	0.89[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1697566	0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1710369	0.93[YRI][hapmap];0.82[EUR][1000 genomes]
rs2249782	0.96[CEU][hapmap]
rs273619	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs273641	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273643	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs273644	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs273646	0.93[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs273647	0.92[CEU][hapmap]
rs273648	0.92[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs273649	0.92[CEU][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs273650	0.93[CEU][hapmap]
rs273651	0.93[CEU][hapmap]
rs273652	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs273653	0.88[CEU][hapmap]
rs9676731	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv518134	chr19:51750238-51765953	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1060026	chr19:51751123-51773175	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51762600-51772600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr19:51762800-51767200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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