Variant report

Variant	rs9676731
Chromosome Location	chr19:51754532-51754533
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C19orf75-1	chr19:51754332-51754799	NONHSAT067424
2	lnc-VSIG10L-1	chr19:51754485-51754788	ENSG00000268595.1
3	lnc-C19orf75-1	chr19:51754503-51754799	NONHSAT067426

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1034521	1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10402797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10406033	1.00[CEU][hapmap]
rs10406897	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10412123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10412214	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11084061	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11084062	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11084063	1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11084064	0.95[ASN][1000 genomes]
rs11668174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11672446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12461282	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12461354	0.82[CHB][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1319675	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1501447	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1501448	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1501449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1566578	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs166653	0.82[JPT][hapmap]
rs1710381	0.82[JPT][hapmap]
rs17801843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1803254	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs273619	0.82[JPT][hapmap]
rs273644	0.82[JPT][hapmap]
rs34606577	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7253831	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7256372	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7256512	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73612300	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8102103	1.00[CEU][hapmap]
rs8103085	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs989502	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs989504	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv519982	chr19:51750238-51758127	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv518134	chr19:51750238-51765953	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1060026	chr19:51751123-51773175	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51753200-51756400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr19:51753400-51755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:51753400-51755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:51754000-51755800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr19:51754200-51754600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr19:51754200-51754800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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