Variant report

Variant	rs1803254
Chromosome Location	chr19:51743144-51743145
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD33-2	chr19:51742773-51743270	NONHSAT067423

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1034521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10402797	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10406897	0.94[GIH][hapmap];0.86[MEX][hapmap]
rs10412123	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10412214	0.82[CHB][hapmap]
rs11084061	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11084062	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11084063	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11084064	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11668174	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11672446	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12461282	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12461354	0.82[CHB][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1319675	0.91[EUR][1000 genomes]
rs1501447	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1501448	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1501449	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1566578	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17801843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34606577	0.91[EUR][1000 genomes]
rs7253831	0.93[EUR][1000 genomes]
rs7256372	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7256512	0.93[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73612300	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8103085	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9676731	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs989502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs989504	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51731000-51748800	Weak transcription	K562	blood
2	chr19:51733400-51744200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr19:51734200-51744200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr19:51735800-51743600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr19:51736400-51744000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:51736800-51744000	Weak transcription	Spleen	Spleen
7	chr19:51739000-51748800	Weak transcription	Adipose Nuclei	Adipose
8	chr19:51742400-51745400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr19:51743000-51744000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
10	chr19:51743000-51744200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:51743000-51748800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links