Variant report

Variant	rs7256512
Chromosome Location	chr19:51758644-51758645
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1034521	0.93[CHB][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10402797	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10406897	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10412123	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10412214	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11084061	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11084062	1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11084063	0.93[CHB][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11084064	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11668174	0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11672446	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12461282	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12461354	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1319675	0.89[ASN][1000 genomes]
rs1501447	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1501448	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1501449	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1566578	0.93[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17801843	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1803254	0.93[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34606577	0.89[ASN][1000 genomes]
rs4330015	0.83[AFR][1000 genomes]
rs7253831	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7256372	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612300	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8103085	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9676731	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs989502	0.93[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs989504	0.93[CHB][hapmap];0.91[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv518134	chr19:51750238-51765953	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1060026	chr19:51751123-51773175	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51757400-51759400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr19:51757400-51759400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr19:51757400-51759600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:51757400-51761000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr19:51757600-51758800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr19:51757600-51759400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:51757600-51761200	Weak transcription	Primary monocytes fromperipheralblood	blood

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