Variant report

Variant	rs17105058
Chromosome Location	chr14:68610067-68610068
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68604504..68610375-chr14:68709920..68717829,10	MCF-7	breast:
2	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
3	chr14:68608519..68611286-chr14:68675156..68679124,3	MCF-7	breast:
4	chr14:68604583..68613347-chr14:69257128..69263457,24	MCF-7	breast:
5	chr14:68605985..68611095-chr14:68698031..68701146,7	MCF-7	breast:
6	chr14:68602495..68610533-chr14:68655867..68660749,19	MCF-7	breast:
7	chr14:68609991..68612093-chr14:69279827..69282795,2	MCF-7	breast:
8	chr14:68601301..68602871-chr14:68607372..68610107,2	MCF-7	breast:
9	chr14:68601506..68610081-chr14:68654290..68661321,21	MCF-7	breast:
10	chr14:68609744..68611384-chr14:68720163..68721709,2	MCF-7	breast:
11	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11850079	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs11851367	0.89[AFR][1000 genomes]
rs17105062	0.86[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17105073	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17105083	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17105088	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17105102	0.84[ASW][hapmap]
rs2094326	0.84[ASW][hapmap]
rs7154205	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68601800-68613600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:68601800-68614400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:68601800-68614800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:68601800-68615600	Enhancers	HMEC	breast
5	chr14:68602400-68610200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:68603800-68611400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:68603800-68612400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:68603800-68612800	Enhancers	Fetal Intestine Large	intestine
9	chr14:68603800-68614000	Enhancers	Fetal Intestine Small	intestine
10	chr14:68603800-68614400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:68603800-68614600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:68603800-68614800	Enhancers	HSMM	muscle
13	chr14:68604000-68611400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:68604200-68614800	Enhancers	NHLF	lung
15	chr14:68604400-68613200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:68604800-68613000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:68605000-68614800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr14:68605200-68610200	Weak transcription	Colonic Mucosa	Colon
19	chr14:68605600-68611800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:68605800-68613800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:68606200-68610400	Enhancers	Rectal Smooth Muscle	rectum
22	chr14:68606200-68613200	Enhancers	Osteobl	bone
23	chr14:68606200-68614000	Enhancers	Fetal Muscle Leg	muscle
24	chr14:68606400-68613400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:68606800-68610200	Weak transcription	Esophagus	oesophagus
26	chr14:68606800-68610400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:68606800-68614800	Enhancers	NHDF-Ad	bronchial
28	chr14:68607000-68610400	Weak transcription	Gastric	stomach
29	chr14:68607200-68610400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:68607200-68610400	Weak transcription	Aorta	Aorta
31	chr14:68607200-68623600	Weak transcription	Ovary	ovary
32	chr14:68607600-68610200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:68607600-68610200	Weak transcription	HUVEC	blood vessel
34	chr14:68607600-68611400	Enhancers	Hela-S3	cervix
35	chr14:68607600-68615000	Enhancers	NHEK	skin
36	chr14:68607800-68610200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:68607800-68616600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:68608400-68613400	Weak transcription	Fetal Heart	heart
39	chr14:68608400-68613800	Enhancers	Primary hematopoietic stem cells	blood
40	chr14:68608400-68613800	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr14:68608800-68612200	Enhancers	Primary T cells from cord blood	blood
42	chr14:68608800-68612800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr14:68609200-68610200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr14:68609200-68610200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr14:68609200-68611200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:68609200-68612200	Enhancers	Fetal Thymus	thymus
47	chr14:68609400-68611000	Enhancers	Fetal Brain Male	brain
48	chr14:68609400-68611200	Enhancers	Fetal Brain Female	brain
49	chr14:68609600-68610200	Enhancers	Colon Smooth Muscle	Colon
50	chr14:68609600-68610600	Enhancers	Fetal Muscle Trunk	muscle

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