Variant report

Variant	rs17105088
Chromosome Location	chr14:68646313-68646314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68602556..68605498-chr14:68644856..68647677,2	MCF-7	breast:
2	chr14:68606522..68609146-chr14:68646292..68648730,3	MCF-7	breast:
3	chr14:68635724..68652229-chr14:68652309..68662207,28	MCF-7	breast:
4	chr14:68407559..68409151-chr14:68644615..68646770,2	MCF-7	breast:
5	chr14:68407881..68410251-chr14:68645249..68646841,2	MCF-7	breast:
6	chr14:68644184..68646511-chr14:68924637..68927356,2	MCF-7	breast:
7	chr14:68645595..68647728-chr14:69282416..69284911,2	MCF-7	breast:
8	chr14:68644898..68647865-chr14:68656989..68659986,2	K562	blood:
9	chr14:68604553..68606506-chr14:68645240..68647824,2	MCF-7	breast:
10	chr14:68641980..68649731-chr14:69257226..69262968,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11850079	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850654	0.83[YRI][hapmap]
rs11851367	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17105058	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17105062	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17105073	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17105083	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35131778	1.00[EUR][1000 genomes]
rs7154205	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1048794	chr14:68614152-68649231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68635400-68648200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:68636200-68648000	Weak transcription	HSMM	muscle
3	chr14:68640400-68647600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:68640400-68648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:68640600-68648200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:68641000-68648200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:68641000-68648200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:68641200-68647600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:68641400-68647400	Weak transcription	HepG2	liver
10	chr14:68641400-68648400	Weak transcription	Liver	Liver
11	chr14:68641400-68658000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:68642200-68647400	Weak transcription	Fetal Intestine Large	intestine
13	chr14:68642400-68659800	Weak transcription	Pancreas	Pancrea
14	chr14:68644400-68646600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:68644600-68646600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:68644600-68646600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:68644600-68646600	Enhancers	Duodenum Mucosa	Duodenum
18	chr14:68644800-68648000	Weak transcription	Small Intestine	intestine
19	chr14:68644800-68648400	Weak transcription	Esophagus	oesophagus
20	chr14:68644800-68648400	Weak transcription	Ovary	ovary
21	chr14:68645000-68651000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr14:68645000-68655600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:68645200-68646400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr14:68645200-68647000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr14:68645400-68646600	Weak transcription	Fetal Stomach	stomach
26	chr14:68645400-68647800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:68645400-68647800	Weak transcription	NHDF-Ad	bronchial
28	chr14:68645400-68648000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:68645600-68647400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:68645600-68647600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr14:68645600-68647800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:68645600-68648000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:68645600-68648000	Weak transcription	Fetal Muscle Leg	muscle
34	chr14:68645600-68648000	Weak transcription	Fetal Thymus	thymus
35	chr14:68645600-68648000	Weak transcription	NH-A	brain
36	chr14:68645600-68648200	Weak transcription	NHEK	skin
37	chr14:68645600-68648400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:68645600-68648600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:68645800-68648000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:68645800-68648000	Weak transcription	Colon Smooth Muscle	Colon
41	chr14:68645800-68648400	Weak transcription	Fetal Lung	lung
42	chr14:68646000-68646800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr14:68646000-68647400	Weak transcription	Stomach Mucosa	stomach
44	chr14:68646000-68647600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:68646000-68647800	Weak transcription	A549	lung
46	chr14:68646000-68647800	Weak transcription	Osteobl	bone
47	chr14:68646000-68648000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:68646000-68648000	Weak transcription	Fetal Intestine Small	intestine
49	chr14:68646000-68648200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:68646000-68648600	Weak transcription	Rectal Mucosa Donor 31	rectum

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