Variant report

Variant	rs17105539
Chromosome Location	chr14:37325487-37325488
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17105509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17105516	0.88[JPT][hapmap]
rs6571765	0.87[JPT][hapmap]
rs8006510	0.87[JPT][hapmap]
rs8010503	0.87[JPT][hapmap]
rs8010630	0.88[JPT][hapmap]
rs8010937	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs8012773	0.88[JPT][hapmap]
rs8021615	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1047409	chr14:37276300-37356945	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37317200-37325600	Weak transcription	Gastric	stomach
2	chr14:37317800-37340400	Weak transcription	K562	blood
3	chr14:37323000-37325800	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:37323400-37327400	Weak transcription	Adipose Nuclei	Adipose
5	chr14:37324800-37325800	Bivalent Enhancer	HepG2	liver
6	chr14:37325000-37326000	Enhancers	Stomach Mucosa	stomach
7	chr14:37325000-37327200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:37325200-37325800	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr14:37325200-37326000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:37325200-37327200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:37325200-37327600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr14:37325400-37325800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr14:37325400-37326400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr14:37325400-37327200	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links