Variant report

Variant	rs8021615
Chromosome Location	chr14:37326374-37326375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17105509	0.87[JPT][hapmap]
rs17105516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17105523	0.93[ASN][1000 genomes]
rs17105539	0.88[JPT][hapmap]
rs6571765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7150169	0.92[ASN][1000 genomes]
rs8006510	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8010503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs8010630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs8012773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs909016	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1047409	chr14:37276300-37356945	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37317800-37340400	Weak transcription	K562	blood
2	chr14:37323400-37327400	Weak transcription	Adipose Nuclei	Adipose
3	chr14:37325000-37327200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr14:37325200-37327200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:37325200-37327600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:37325400-37326400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:37325400-37327200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr14:37325600-37326600	Enhancers	Gastric	stomach
9	chr14:37325800-37326400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr14:37325800-37326600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr14:37326000-37328800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:37326000-37337800	Weak transcription	Stomach Mucosa	stomach
13	chr14:37326200-37326600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:37326200-37326600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:37326200-37326600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr14:37326200-37327000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:37326200-37327600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr14:37326200-37327600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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