Variant report

Variant	rs17105732
Chromosome Location	chr14:77819247-77819248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77817964..77819499-chr14:77821032..77823403,2	MCF-7	breast:
2	chr14:77815185..77819535-chr14:77922944..77925749,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151445	Chromatin interaction
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10145540	1.00[CHD][hapmap]
rs17105723	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17105811	1.00[CHD][hapmap]
rs17751424	1.00[ASW][hapmap]
rs17824567	1.00[CHD][hapmap]
rs57225979	1.00[EUR][1000 genomes]
rs60053469	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60201221	1.00[EUR][1000 genomes]
rs61228795	1.00[EUR][1000 genomes]
rs6574369	1.00[EUR][1000 genomes]
rs7140255	1.00[EUR][1000 genomes]
rs7140631	1.00[EUR][1000 genomes]
rs7159090	0.96[EUR][1000 genomes]
rs73311393	1.00[EUR][1000 genomes]
rs73313208	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8005999	1.00[CHD][hapmap]
rs8019660	1.00[EUR][1000 genomes]
rs8177569	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77793200-77824600	Weak transcription	Psoas Muscle	Psoas
2	chr14:77803800-77835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:77806200-77819400	Weak transcription	A549	lung
4	chr14:77806400-77838600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr14:77806600-77822200	Weak transcription	NHDF-Ad	bronchial
6	chr14:77807800-77819600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:77807800-77822000	Weak transcription	Osteobl	bone
8	chr14:77808400-77830600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:77809600-77825000	Weak transcription	Gastric	stomach
10	chr14:77809600-77842000	Weak transcription	HUVEC	blood vessel
11	chr14:77809800-77820200	Weak transcription	Brain Substantia Nigra	brain
12	chr14:77809800-77821200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:77810000-77820200	Weak transcription	Hela-S3	cervix
14	chr14:77810000-77838800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:77810200-77819400	Weak transcription	Brain Anterior Caudate	brain
16	chr14:77810200-77820000	Weak transcription	Ovary	ovary
17	chr14:77810600-77822200	Weak transcription	K562	blood
18	chr14:77810600-77825400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:77810800-77820200	Weak transcription	Brain Angular Gyrus	brain
20	chr14:77810800-77823800	Weak transcription	Right Ventricle	heart
21	chr14:77811000-77821400	Weak transcription	Lung	lung
22	chr14:77811000-77824400	Weak transcription	Spleen	Spleen
23	chr14:77811200-77830000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:77811200-77835000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:77812800-77842000	Weak transcription	Pancreas	Pancrea
26	chr14:77813000-77819600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:77813000-77827000	Weak transcription	Primary B cells from cord blood	blood
28	chr14:77813000-77835600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr14:77813800-77842400	Weak transcription	Aorta	Aorta
30	chr14:77814400-77821200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:77814400-77824400	Weak transcription	Fetal Kidney	kidney
32	chr14:77816600-77822200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr14:77816800-77820200	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:77816800-77820200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr14:77816800-77822000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:77816800-77823600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr14:77816800-77835600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr14:77817000-77826000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:77817000-77842000	Weak transcription	Colon Smooth Muscle	Colon
40	chr14:77817200-77822200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:77817200-77825200	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr14:77817200-77826600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr14:77817200-77827000	Weak transcription	GM12878-XiMat	blood
44	chr14:77817200-77840000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:77817200-77841600	Weak transcription	Brain Germinal Matrix	brain
46	chr14:77817200-77842000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:77817400-77820200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:77817400-77822200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:77817400-77822800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr14:77817400-77823600	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links