Variant report

Variant	rs60201221
Chromosome Location	chr14:77823253-77823254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77817964..77819499-chr14:77821032..77823403,2	MCF-7	breast:
2	chr14:77823236..77824802-chr14:77924550..77926224,2	K562	blood:
3	chr14:77822120..77823745-chr14:77842166..77843696,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100580	Chromatin interaction
ENSG00000100591	Chromatin interaction
ENSG00000100583	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17105723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17105732	1.00[EUR][1000 genomes]
rs57225979	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60053469	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61228795	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6574369	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140255	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140631	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159090	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73311393	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313208	1.00[EUR][1000 genomes]
rs8019660	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77793200-77824600	Weak transcription	Psoas Muscle	Psoas
2	chr14:77803800-77835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:77806400-77838600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:77808400-77830600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:77809600-77825000	Weak transcription	Gastric	stomach
6	chr14:77809600-77842000	Weak transcription	HUVEC	blood vessel
7	chr14:77810000-77838800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:77810600-77825400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:77810800-77823800	Weak transcription	Right Ventricle	heart
10	chr14:77811000-77824400	Weak transcription	Spleen	Spleen
11	chr14:77811200-77830000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:77811200-77835000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:77812800-77842000	Weak transcription	Pancreas	Pancrea
14	chr14:77813000-77827000	Weak transcription	Primary B cells from cord blood	blood
15	chr14:77813000-77835600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:77813800-77842400	Weak transcription	Aorta	Aorta
17	chr14:77814400-77824400	Weak transcription	Fetal Kidney	kidney
18	chr14:77816800-77823600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr14:77816800-77835600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:77817000-77826000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:77817000-77842000	Weak transcription	Colon Smooth Muscle	Colon
22	chr14:77817200-77825200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:77817200-77826600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr14:77817200-77827000	Weak transcription	GM12878-XiMat	blood
25	chr14:77817200-77840000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr14:77817200-77841600	Weak transcription	Brain Germinal Matrix	brain
27	chr14:77817200-77842000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:77817400-77823600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:77817400-77830400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr14:77817400-77830600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:77817400-77835200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr14:77817400-77835400	Weak transcription	Primary T cells from cord blood	blood
33	chr14:77817400-77841200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:77817600-77835400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:77817800-77837600	Weak transcription	Fetal Intestine Small	intestine
36	chr14:77818000-77842000	Weak transcription	Fetal Stomach	stomach
37	chr14:77818200-77826800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr14:77818200-77831800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr14:77818200-77835400	Weak transcription	Dnd41	blood
40	chr14:77820600-77828200	Weak transcription	Brain Angular Gyrus	brain
41	chr14:77822000-77823600	Enhancers	Brain Anterior Caudate	brain
42	chr14:77822200-77823400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:77822200-77823800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:77822200-77828200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:77822400-77823600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:77822400-77841600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:77822600-77823800	Weak transcription	Brain Substantia Nigra	brain
48	chr14:77822800-77823800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr14:77822800-77824200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:77823000-77823800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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