Variant report

Variant	rs17106000
Chromosome Location	chr14:69075228-69075229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69073750..69075278-chr14:69076266..69078869,2	K562	blood:
2	chr14:69073812..69075425-chr14:69080872..69083380,2	MCF-7	breast:
3	chr14:69071037..69077466-chr14:69256300..69263431,10	MCF-7	breast:
4	chr14:69070456..69072481-chr14:69073546..69076454,2	K562	blood:
5	chr14:69074322..69077383-chr14:69088480..69091108,3	MCF-7	breast:
6	chr14:69075162..69077749-chr14:69093538..69096283,3	MCF-7	breast:
7	chr14:69043815..69046176-chr14:69072899..69075411,2	MCF-7	breast:
8	chr14:69034895..69037596-chr14:69073887..69076844,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EXD2-3	chr14:69075009-69075605	NONHSAT037488

No data

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17105901	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2256637	1.00[CEU][hapmap]
rs2256639	1.00[CEU][hapmap]
rs2256860	1.00[CEU][hapmap]
rs2256983	1.00[CEU][hapmap]
rs2256988	1.00[CEU][hapmap]
rs2256994	1.00[CEU][hapmap]
rs2257007	1.00[CEU][hapmap]
rs2257014	1.00[CEU][hapmap]
rs8010846	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902069	chr14:69068384-69077457	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv516614	chr14:69069594-69077457	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69061200-69078000	Weak transcription	Fetal Heart	heart
2	chr14:69069600-69080000	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69070400-69077400	Enhancers	Fetal Muscle Trunk	muscle
4	chr14:69072200-69075600	Enhancers	Colon Smooth Muscle	Colon
5	chr14:69072400-69075400	Enhancers	Gastric	stomach
6	chr14:69072400-69075400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr14:69072400-69079400	Enhancers	Fetal Intestine Large	intestine
8	chr14:69072400-69079800	Enhancers	Fetal Stomach	stomach
9	chr14:69072600-69075400	Enhancers	Ovary	ovary
10	chr14:69072600-69075400	Enhancers	Rectal Smooth Muscle	rectum
11	chr14:69072600-69075600	Enhancers	Colonic Mucosa	Colon
12	chr14:69072600-69078000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:69072600-69079400	Enhancers	Placenta	Placenta
14	chr14:69072800-69075400	Enhancers	Brain Anterior Caudate	brain
15	chr14:69072800-69075600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:69072800-69075600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr14:69072800-69076200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr14:69072800-69076400	Enhancers	Adipose Nuclei	Adipose
19	chr14:69072800-69079200	Enhancers	Fetal Thymus	thymus
20	chr14:69072800-69079400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr14:69073000-69075400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:69073000-69075400	Enhancers	Right Atrium	heart
23	chr14:69073000-69075600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr14:69073000-69076200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr14:69073200-69075600	Enhancers	Brain Substantia Nigra	brain
26	chr14:69073400-69075400	Enhancers	Right Ventricle	heart
27	chr14:69073400-69075800	Enhancers	Fetal Lung	lung
28	chr14:69073400-69076000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:69073400-69076000	Enhancers	Primary hematopoietic stem cells	blood
30	chr14:69073400-69076200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr14:69073400-69079800	Enhancers	Stomach Mucosa	stomach
32	chr14:69073600-69075400	Enhancers	Duodenum Mucosa	Duodenum
33	chr14:69073600-69075400	Enhancers	Left Ventricle	heart
34	chr14:69073600-69075800	Enhancers	Brain Hippocampus Middle	brain
35	chr14:69073600-69075800	Enhancers	HSMM	muscle
36	chr14:69073600-69076000	Enhancers	Primary B cells from peripheral blood	blood
37	chr14:69073600-69076200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr14:69073600-69076200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr14:69073600-69076400	Enhancers	HSMMtube	muscle
40	chr14:69073800-69075400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr14:69073800-69075400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:69073800-69075400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr14:69073800-69075400	Enhancers	Brain Cingulate Gyrus	brain
44	chr14:69073800-69075400	Enhancers	Esophagus	oesophagus
45	chr14:69073800-69075600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr14:69073800-69075600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr14:69073800-69075600	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr14:69073800-69075600	Enhancers	Thymus	Thymus
49	chr14:69073800-69076000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:69073800-69076200	Enhancers	Primary T cells fromperipheralblood	blood

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