Variant report

Variant	rs2256983
Chromosome Location	chr14:69058536-69058537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69055857..69058833-chr14:69094583..69097489,2	MCF-7	breast:
2	chr14:69032430..69035080-chr14:69056071..69058771,2	MCF-7	breast:
3	chr14:69054452..69058686-chr14:69249853..69254831,4	MCF-7	breast:
4	chr14:69056722..69058662-chr14:69255597..69257202,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17105901	1.00[CEU][hapmap]
rs17106000	1.00[CEU][hapmap]
rs2256637	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2256639	1.00[CEU][hapmap]
rs2256860	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2256988	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2256994	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257001	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257007	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257014	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257021	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257111	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2257116	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4899246	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4902605	1.00[EUR][1000 genomes]
rs59490067	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69047400-69060200	Weak transcription	Spleen	Spleen
2	chr14:69049800-69064000	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69050200-69058800	Enhancers	Fetal Muscle Trunk	muscle
4	chr14:69050200-69058800	Enhancers	Placenta	Placenta
5	chr14:69051200-69061800	Enhancers	Fetal Stomach	stomach
6	chr14:69052600-69060400	Weak transcription	Osteobl	bone
7	chr14:69052800-69059600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:69052800-69064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:69053400-69064800	Weak transcription	Brain Substantia Nigra	brain
10	chr14:69054200-69063400	Weak transcription	Small Intestine	intestine
11	chr14:69054400-69060400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:69054600-69060400	Weak transcription	Fetal Brain Male	brain
13	chr14:69054600-69061000	Weak transcription	NHEK	skin
14	chr14:69054800-69060200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:69054800-69060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:69054800-69060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:69054800-69060600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:69054800-69061400	Enhancers	Rectal Smooth Muscle	rectum
19	chr14:69055000-69060200	Weak transcription	Fetal Brain Female	brain
20	chr14:69055200-69060400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:69056000-69061000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr14:69056200-69060400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr14:69056400-69060400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:69056600-69060000	Weak transcription	A549	lung
25	chr14:69056600-69060200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:69056600-69060400	Weak transcription	NH-A	brain
27	chr14:69056800-69058600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:69056800-69059400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:69056800-69059800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:69056800-69060200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:69056800-69060200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:69056800-69060400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:69056800-69060400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:69057000-69058800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:69057000-69059000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr14:69057000-69059200	Weak transcription	HepG2	liver
37	chr14:69057000-69059400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:69057000-69059400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr14:69057000-69059800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:69057000-69060400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:69057000-69060400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:69057000-69060600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:69057000-69061400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:69057000-69065800	Weak transcription	Gastric	stomach
45	chr14:69057200-69059400	Weak transcription	HSMM	muscle
46	chr14:69057200-69059800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:69057200-69060000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:69057200-69060000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr14:69057200-69060200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr14:69057200-69060200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links