Variant report

Variant	rs59490067
Chromosome Location	chr14:69061649-69061650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69061025..69063576-chr14:69260418..69262732,3	K562	blood:
2	chr14:69059806..69062420-chr14:69100843..69102617,2	MCF-7	breast:
3	chr14:69050016..69051661-chr14:69060391..69062246,2	MCF-7	breast:
4	chr14:69059250..69061787-chr14:69065099..69067074,2	K562	blood:
5	chr14:69061649..69064436-chr14:69261029..69262556,2	MCF-7	breast:
6	chr14:69058975..69063835-chr14:69063915..69067303,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EXD2-6	chr14:69061202-69061705	NONHSAT037485

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2256637	1.00[EUR][1000 genomes]
rs2256860	1.00[EUR][1000 genomes]
rs2256983	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2256988	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2256994	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257000	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257001	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257007	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257014	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2257021	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902605	1.00[EUR][1000 genomes]
rs59934413	0.80[AFR][1000 genomes]
rs61985825	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69049800-69064000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69051200-69061800	Enhancers	Fetal Stomach	stomach
3	chr14:69052800-69064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:69053400-69064800	Weak transcription	Brain Substantia Nigra	brain
5	chr14:69054200-69063400	Weak transcription	Small Intestine	intestine
6	chr14:69057000-69065800	Weak transcription	Gastric	stomach
7	chr14:69057200-69063000	Weak transcription	Stomach Mucosa	stomach
8	chr14:69057200-69063400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:69057400-69064600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:69057600-69063400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:69057600-69063400	Weak transcription	Right Atrium	heart
12	chr14:69057600-69065200	Weak transcription	Lung	lung
13	chr14:69057600-69065800	Weak transcription	Left Ventricle	heart
14	chr14:69057800-69064800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:69058600-69062200	Enhancers	Fetal Kidney	kidney
16	chr14:69058600-69065200	Weak transcription	Esophagus	oesophagus
17	chr14:69058800-69065000	Weak transcription	Ovary	ovary
18	chr14:69059000-69063400	Weak transcription	Right Ventricle	heart
19	chr14:69059200-69061800	Enhancers	Fetal Muscle Trunk	muscle
20	chr14:69059200-69061800	Enhancers	Placenta	Placenta
21	chr14:69059200-69062200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr14:69059200-69062200	Enhancers	HepG2	liver
23	chr14:69059400-69061800	Enhancers	HSMM	muscle
24	chr14:69059400-69062200	Enhancers	Primary hematopoietic stem cells	blood
25	chr14:69059400-69062400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:69059400-69062400	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr14:69059400-69062400	Enhancers	HSMMtube	muscle
28	chr14:69059400-69063800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:69059600-69062200	Enhancers	Placenta Amnion	Placenta Amnion
30	chr14:69059600-69064800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr14:69059800-69061800	Enhancers	Primary B cells from cord blood	blood
32	chr14:69059800-69061800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:69059800-69061800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:69059800-69061800	Enhancers	Fetal Thymus	thymus
35	chr14:69059800-69062200	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr14:69059800-69063200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr14:69060000-69062000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr14:69060000-69062000	Enhancers	Primary B cells from peripheral blood	blood
39	chr14:69060000-69062200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr14:69060000-69062200	Enhancers	A549	lung
41	chr14:69060000-69065000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr14:69060200-69061800	Enhancers	H1 Cell Line	embryonic stem cell
43	chr14:69060200-69061800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr14:69060200-69062000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:69060200-69062000	Enhancers	HMEC	breast
46	chr14:69060200-69062200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:69060200-69062200	Enhancers	Primary T cells from cord blood	blood
48	chr14:69060200-69062400	Enhancers	Thymus	Thymus
49	chr14:69060200-69062400	Enhancers	Dnd41	blood
50	chr14:69060200-69064400	Enhancers	Monocytes-CD14+_RO01746	blood

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