Variant report

Variant	rs59934413
Chromosome Location	chr14:69060583-69060584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69059475..69061008-chr14:69062632..69064559,2	K562	blood:
2	chr14:69059806..69062420-chr14:69100843..69102617,2	MCF-7	breast:
3	chr14:69050016..69051661-chr14:69060391..69062246,2	MCF-7	breast:
4	chr14:69059250..69061787-chr14:69065099..69067074,2	K562	blood:
5	chr14:69058975..69063835-chr14:69063915..69067303,5	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12878761	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12894230	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1547012	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17829341	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2257111	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257116	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36035347	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4531674	0.89[EUR][1000 genomes]
rs4899246	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902604	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59490067	0.80[AFR][1000 genomes]
rs61985819	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61985820	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985824	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985825	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69049800-69064000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69051200-69061800	Enhancers	Fetal Stomach	stomach
3	chr14:69052800-69064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:69053400-69064800	Weak transcription	Brain Substantia Nigra	brain
5	chr14:69054200-69063400	Weak transcription	Small Intestine	intestine
6	chr14:69054600-69061000	Weak transcription	NHEK	skin
7	chr14:69054800-69060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:69054800-69060600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:69054800-69061400	Enhancers	Rectal Smooth Muscle	rectum
10	chr14:69056000-69061000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:69057000-69060600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:69057000-69061400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:69057000-69065800	Weak transcription	Gastric	stomach
14	chr14:69057200-69060600	Weak transcription	Fetal Heart	heart
15	chr14:69057200-69063000	Weak transcription	Stomach Mucosa	stomach
16	chr14:69057200-69063400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:69057400-69060600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr14:69057400-69061400	Weak transcription	Psoas Muscle	Psoas
19	chr14:69057400-69064600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:69057600-69063400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr14:69057600-69063400	Weak transcription	Right Atrium	heart
22	chr14:69057600-69065200	Weak transcription	Lung	lung
23	chr14:69057600-69065800	Weak transcription	Left Ventricle	heart
24	chr14:69057800-69061000	Weak transcription	Pancreas	Pancrea
25	chr14:69057800-69064800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr14:69058200-69061400	Enhancers	Colon Smooth Muscle	Colon
27	chr14:69058600-69062200	Enhancers	Fetal Kidney	kidney
28	chr14:69058600-69065200	Weak transcription	Esophagus	oesophagus
29	chr14:69058800-69065000	Weak transcription	Ovary	ovary
30	chr14:69059000-69063400	Weak transcription	Right Ventricle	heart
31	chr14:69059200-69061800	Enhancers	Fetal Muscle Trunk	muscle
32	chr14:69059200-69061800	Enhancers	Placenta	Placenta
33	chr14:69059200-69062200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr14:69059200-69062200	Enhancers	HepG2	liver
35	chr14:69059400-69061400	Enhancers	Fetal Lung	lung
36	chr14:69059400-69061600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:69059400-69061800	Enhancers	HSMM	muscle
38	chr14:69059400-69062200	Enhancers	Primary hematopoietic stem cells	blood
39	chr14:69059400-69062400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:69059400-69062400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr14:69059400-69062400	Enhancers	HSMMtube	muscle
42	chr14:69059400-69063800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:69059600-69062200	Enhancers	Placenta Amnion	Placenta Amnion
44	chr14:69059600-69064800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr14:69059800-69061600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:69059800-69061800	Enhancers	Primary B cells from cord blood	blood
47	chr14:69059800-69061800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr14:69059800-69061800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:69059800-69061800	Enhancers	Fetal Thymus	thymus
50	chr14:69059800-69062200	Enhancers	HUES64 Cell Line	embryonic stem cell

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