Variant report

Variant	rs61985825
Chromosome Location	chr14:69062336-69062337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69061025..69063576-chr14:69260418..69262732,3	K562	blood:
2	chr14:69059806..69062420-chr14:69100843..69102617,2	MCF-7	breast:
3	chr14:69061649..69064436-chr14:69261029..69262556,2	MCF-7	breast:
4	chr14:69058975..69063835-chr14:69063915..69067303,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12878761	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12894230	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1547012	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17829341	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2257111	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257116	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36035347	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4531674	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4899246	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902604	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59490067	0.80[AFR][1000 genomes]
rs59934413	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985819	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61985820	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985824	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69049800-69064000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69052800-69064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:69053400-69064800	Weak transcription	Brain Substantia Nigra	brain
4	chr14:69054200-69063400	Weak transcription	Small Intestine	intestine
5	chr14:69057000-69065800	Weak transcription	Gastric	stomach
6	chr14:69057200-69063000	Weak transcription	Stomach Mucosa	stomach
7	chr14:69057200-69063400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:69057400-69064600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:69057600-69063400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:69057600-69063400	Weak transcription	Right Atrium	heart
11	chr14:69057600-69065200	Weak transcription	Lung	lung
12	chr14:69057600-69065800	Weak transcription	Left Ventricle	heart
13	chr14:69057800-69064800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr14:69058600-69065200	Weak transcription	Esophagus	oesophagus
15	chr14:69058800-69065000	Weak transcription	Ovary	ovary
16	chr14:69059000-69063400	Weak transcription	Right Ventricle	heart
17	chr14:69059400-69062400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:69059400-69062400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr14:69059400-69062400	Enhancers	HSMMtube	muscle
20	chr14:69059400-69063800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:69059600-69064800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:69059800-69063200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr14:69060000-69065000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:69060200-69062400	Enhancers	Thymus	Thymus
25	chr14:69060200-69062400	Enhancers	Dnd41	blood
26	chr14:69060200-69064400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr14:69060200-69068200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr14:69060400-69062400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr14:69060400-69063800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:69060600-69062400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr14:69060800-69064800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:69060800-69065000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:69061200-69063200	Weak transcription	NH-A	brain
34	chr14:69061200-69064800	Weak transcription	NHLF	lung
35	chr14:69061200-69065000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:69061200-69065000	Weak transcription	Osteobl	bone
37	chr14:69061200-69065200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:69061200-69065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:69061200-69078000	Weak transcription	Fetal Heart	heart
40	chr14:69061400-69063400	Weak transcription	Adipose Nuclei	Adipose
41	chr14:69061400-69063800	Weak transcription	Fetal Intestine Large	intestine
42	chr14:69061400-69064600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:69061400-69064800	Weak transcription	Colon Smooth Muscle	Colon
44	chr14:69061400-69064800	Weak transcription	Fetal Lung	lung
45	chr14:69061400-69064800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:69061400-69065000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:69061400-69065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:69061600-69062800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr14:69061600-69063400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:69061600-69063400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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