Variant report

Variant	rs17106103
Chromosome Location	chr14:37517586-37517587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11848141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848819	1.00[AMR][1000 genomes]
rs17095955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106062	0.86[AFR][1000 genomes]
rs17106083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106126	0.86[AFR][1000 genomes]
rs17106131	0.81[AFR][1000 genomes]
rs714270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7493133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37515200-37517800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:37515400-37518200	Enhancers	Stomach Mucosa	stomach
3	chr14:37515600-37518400	Weak transcription	Pancreas	Pancrea
4	chr14:37516000-37518800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr14:37516200-37517800	Enhancers	NHEK	skin
6	chr14:37516200-37518800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:37516400-37518600	Enhancers	HMEC	breast
8	chr14:37516600-37517600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:37516600-37518000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:37516600-37518600	Enhancers	NH-A	brain
11	chr14:37516800-37517600	Flanking Active TSS	HUVEC	blood vessel
12	chr14:37516800-37518400	Enhancers	Hela-S3	cervix
13	chr14:37517200-37518400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:37517400-37517600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:37517400-37517800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:37517400-37518000	Enhancers	HSMM	muscle
17	chr14:37517400-37518000	Enhancers	Osteobl	bone
18	chr14:37517400-37518800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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