Variant report

Variant	rs17106131
Chromosome Location	chr14:37521234-37521235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11847695	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848802	1.00[AMR][1000 genomes]
rs11849630	1.00[AMR][1000 genomes]
rs11849702	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106062	0.95[AFR][1000 genomes]
rs17106083	0.81[AFR][1000 genomes]
rs17106103	0.81[AFR][1000 genomes]
rs17106107	0.81[AFR][1000 genomes]
rs17106126	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106144	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106145	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106148	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106239	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106258	1.00[AMR][1000 genomes]
rs1950815	1.00[AMR][1000 genomes]
rs714270	0.81[AFR][1000 genomes]
rs7493133	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37520400-37523200	Weak transcription	HSMMtube	muscle
2	chr14:37520600-37521400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr14:37520800-37521400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:37520800-37521600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr14:37521000-37521400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr14:37521000-37525800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links