Variant report

Variant	rs11849702
Chromosome Location	chr14:37560856-37560857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11846560	1.00[YRI][hapmap]
rs11847695	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848141	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs11848802	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11849630	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17095955	0.86[AFR][1000 genomes]
rs17106062	0.89[AFR][1000 genomes]
rs17106083	0.82[YRI][hapmap]
rs17106126	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106131	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106148	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106239	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106258	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1950815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs714270	0.83[YRI][hapmap]
rs7493133	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37553400-37562600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:37559800-37562800	Weak transcription	K562	blood
3	chr14:37560600-37561000	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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