Variant report

Variant	rs17106145
Chromosome Location	chr14:37526606-37526607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11847695	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848141	0.81[AFR][1000 genomes]
rs11848802	1.00[AMR][1000 genomes]
rs11849630	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849702	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17095955	0.81[AFR][1000 genomes]
rs17106062	0.85[AFR][1000 genomes]
rs17106126	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106131	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106148	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106239	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106246	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106258	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1950815	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37525800-37527200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr14:37525800-37527200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr14:37526000-37526800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr14:37526000-37527200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:37526000-37529000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:37526400-37529000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:37526400-37529200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:37526400-37529200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:37526400-37530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:37526600-37529000	Weak transcription	Fetal Heart	heart
11	chr14:37526600-37529600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:37526600-37529800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:37526600-37530200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links