Variant report

Variant	rs17106214
Chromosome Location	chr14:78168798-78168799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:78166641..78172350-chr14:78172652..78176323,11	MCF-7	breast:
2	chr14:78166061..78169254-chr14:78169604..78172317,3	K562	blood:
3	chr14:78166468..78169145-chr14:78172506..78175642,4	K562	blood:

Variant related genes	Relation type
ENSG00000100601	Chromatin interaction
ENSG00000119705	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs58016276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58590201	1.00[AMR][1000 genomes]
rs58620350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59215192	1.00[AMR][1000 genomes]
rs59532454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60806343	1.00[EUR][1000 genomes]
rs7141447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73307387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73307598	1.00[EUR][1000 genomes]
rs73309307	1.00[AMR][1000 genomes]
rs73309309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73319430	1.00[AMR][1000 genomes]
rs73319431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73319432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73319433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73319436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73319438	1.00[AMR][1000 genomes]
rs73319440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003070	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8014573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv2757575	chr14:78104897-78212462	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv34940	chr14:78104897-78222798	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv521287	chr14:78108003-78211225	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv520021	chr14:78152921-78208294	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78127400-78173200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:78138000-78171800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr14:78140400-78172400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:78140600-78173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:78149200-78171400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:78150400-78172200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:78152400-78171200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:78152600-78172200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:78152800-78171400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr14:78153400-78171200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr14:78153400-78171400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr14:78153400-78172000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr14:78154400-78168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:78154400-78172600	Weak transcription	Small Intestine	intestine
15	chr14:78156000-78171400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr14:78156200-78172000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:78156600-78171800	Strong transcription	Fetal Muscle Trunk	muscle
18	chr14:78156800-78170000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:78156800-78171400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:78156800-78172400	Strong transcription	Dnd41	blood
21	chr14:78158600-78172800	Weak transcription	NHDF-Ad	bronchial
22	chr14:78162000-78169600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:78162600-78171400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:78163400-78169000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr14:78163600-78170200	Weak transcription	Fetal Kidney	kidney
26	chr14:78163600-78170600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:78163800-78168800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:78163800-78168800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:78163800-78168800	Weak transcription	Brain Substantia Nigra	brain
30	chr14:78163800-78169000	Weak transcription	Esophagus	oesophagus
31	chr14:78163800-78169000	Weak transcription	Spleen	Spleen
32	chr14:78163800-78169200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr14:78163800-78169200	Weak transcription	Pancreas	Pancrea
34	chr14:78163800-78169400	Weak transcription	NHEK	skin
35	chr14:78163800-78170200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr14:78163800-78170200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr14:78163800-78170200	Weak transcription	Fetal Brain Male	brain
38	chr14:78163800-78170400	Weak transcription	NH-A	brain
39	chr14:78163800-78170400	Weak transcription	NHLF	lung
40	chr14:78163800-78170600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:78163800-78172600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr14:78163800-78172600	Weak transcription	HMEC	breast
43	chr14:78163800-78173400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr14:78163800-78173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr14:78163800-78173400	Weak transcription	Right Ventricle	heart
46	chr14:78164000-78169000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:78164000-78169000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr14:78164000-78169000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:78164000-78169000	Weak transcription	Brain Hippocampus Middle	brain
50	chr14:78164000-78173000	Weak transcription	HSMMtube	muscle

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