Variant report

Variant	rs73319436
Chromosome Location	chr14:78300064-78300065
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78265179..78267744-chr14:78297216..78300164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000063761	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17106214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58016276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58590201	1.00[AMR][1000 genomes]
rs58620350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59215192	1.00[AMR][1000 genomes]
rs59532454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60806343	1.00[EUR][1000 genomes]
rs7141447	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73307387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73307598	1.00[EUR][1000 genomes]
rs73309307	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309309	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313116	0.87[AFR][1000 genomes]
rs73313131	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313147	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73319430	1.00[AMR][1000 genomes]
rs73319431	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73319432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73319433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73319438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8014573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022673	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78267200-78304200	Weak transcription	HSMMtube	muscle
2	chr14:78267200-78310800	Weak transcription	Esophagus	oesophagus
3	chr14:78274800-78316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:78283200-78301800	Weak transcription	Small Intestine	intestine
5	chr14:78283600-78311000	Weak transcription	Hela-S3	cervix
6	chr14:78284200-78309400	Weak transcription	Brain Germinal Matrix	brain
7	chr14:78284200-78312600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:78284800-78300800	Weak transcription	Fetal Brain Male	brain
9	chr14:78284800-78305200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:78285800-78305800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:78286200-78301800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:78286200-78303000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:78286400-78300400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:78286400-78303000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:78286400-78305200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:78287000-78301400	Weak transcription	Right Ventricle	heart
17	chr14:78287000-78309400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr14:78287000-78309600	Weak transcription	Osteobl	bone
19	chr14:78289200-78301200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:78289200-78303400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:78289400-78300600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:78289400-78301000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:78289400-78301800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr14:78289400-78305000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr14:78289400-78305200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:78289400-78305200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:78289600-78300200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:78289600-78301200	Weak transcription	Psoas Muscle	Psoas
29	chr14:78289600-78303800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:78289600-78304600	Weak transcription	Brain Anterior Caudate	brain
31	chr14:78289600-78305000	Weak transcription	Fetal Thymus	thymus
32	chr14:78289600-78307000	Weak transcription	Colonic Mucosa	Colon
33	chr14:78289600-78311600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr14:78289800-78306000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:78289800-78309600	Weak transcription	Fetal Brain Female	brain
36	chr14:78290200-78305600	Weak transcription	Colon Smooth Muscle	Colon
37	chr14:78292800-78305600	Weak transcription	Thymus	Thymus
38	chr14:78293000-78304200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr14:78293000-78304800	Weak transcription	Dnd41	blood
40	chr14:78293400-78331800	Weak transcription	Pancreas	Pancrea
41	chr14:78295200-78301400	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:78295200-78302000	Strong transcription	Primary T cells from cord blood	blood
43	chr14:78295600-78302200	Strong transcription	Liver	Liver
44	chr14:78296200-78300200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr14:78296400-78304200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr14:78296600-78300800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr14:78296600-78303000	Strong transcription	Adipose Nuclei	Adipose
48	chr14:78296800-78301000	Weak transcription	Fetal Stomach	stomach
49	chr14:78297000-78310600	Weak transcription	Spleen	Spleen
50	chr14:78297400-78304000	Weak transcription	Brain Hippocampus Middle	brain

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