Variant report

Variant	rs17106243
Chromosome Location	chr14:69205672-69205673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69203768..69206140-chr14:69210311..69212920,2	K562	blood:
2	chr14:69204312..69206697-chr14:69251799..69254255,2	K562	blood:
3	chr14:69185847..69187659-chr14:69204580..69206147,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17106237	0.87[YRI][hapmap]
rs7146181	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516770	chr14:69204868-69210059	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17106243	KIAA0247	cis	parietal	SCAN
rs17106243	MAX	cis	parietal	SCAN
rs17106243	ZFP36L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69198400-69214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:69199600-69206800	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69200200-69207000	Enhancers	Fetal Stomach	stomach
4	chr14:69201000-69206200	Enhancers	Fetal Heart	heart
5	chr14:69201200-69222600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:69202400-69206200	Enhancers	Ovary	ovary
7	chr14:69202600-69209000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:69202800-69224600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr14:69203400-69206000	Weak transcription	Fetal Kidney	kidney
10	chr14:69203600-69213800	Weak transcription	Esophagus	oesophagus
11	chr14:69203800-69207200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:69203800-69207600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:69203800-69207600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:69203800-69208600	Weak transcription	Fetal Thymus	thymus
15	chr14:69204000-69206000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:69204200-69206400	Weak transcription	Placenta	Placenta
17	chr14:69204200-69219200	Weak transcription	Adipose Nuclei	Adipose
18	chr14:69204400-69205800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr14:69204400-69206000	Weak transcription	Fetal Lung	lung
20	chr14:69204400-69213800	Weak transcription	Right Atrium	heart
21	chr14:69204600-69205800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr14:69204600-69206000	Weak transcription	Fetal Intestine Large	intestine
23	chr14:69205000-69208000	Enhancers	K562	blood
24	chr14:69205000-69210400	Enhancers	Primary B cells from peripheral blood	blood
25	chr14:69205400-69206400	Enhancers	HSMMtube	muscle
26	chr14:69205600-69205800	Enhancers	Colon Smooth Muscle	Colon
27	chr14:69205600-69214200	Weak transcription	Spleen	Spleen
28	chr14:69205600-69216200	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links