Variant report

Variant	rs17106237
Chromosome Location	chr14:69203145-69203146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69201544..69205045-chr14:69260784..69263529,4	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10143427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17106208	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17106213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17106229	0.82[YRI][hapmap]
rs17106243	0.87[YRI][hapmap]
rs194784	1.00[CHB][hapmap]
rs56323038	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57148883	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs74062913	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17106237	MAX	cis	parietal	SCAN
rs17106237	RDH11	cis	cerebellum	SCAN
rs17106237	UPF0639	cis	parietal	SCAN

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69196400-69203600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:69196600-69203200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:69198400-69203400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:69198400-69214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:69198800-69203200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:69199000-69203600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:69199200-69204400	Enhancers	Brain Germinal Matrix	brain
8	chr14:69199400-69203800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:69199600-69206800	Enhancers	Fetal Muscle Leg	muscle
10	chr14:69199800-69203400	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:69199800-69203800	Enhancers	Fetal Thymus	thymus
12	chr14:69199800-69204000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr14:69200000-69203200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:69200000-69203200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr14:69200000-69204200	Enhancers	Adipose Nuclei	Adipose
16	chr14:69200000-69205400	Enhancers	Fetal Muscle Trunk	muscle
17	chr14:69200200-69203200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:69200200-69203400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr14:69200200-69207000	Enhancers	Fetal Stomach	stomach
20	chr14:69201000-69206200	Enhancers	Fetal Heart	heart
21	chr14:69201200-69203200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:69201200-69203200	Weak transcription	Left Ventricle	heart
23	chr14:69201200-69222600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:69201600-69203200	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:69201600-69203200	Weak transcription	GM12878-XiMat	blood
26	chr14:69202000-69203200	Weak transcription	Primary B cells from cord blood	blood
27	chr14:69202000-69203400	Weak transcription	Pancreas	Pancrea
28	chr14:69202000-69204800	Weak transcription	Spleen	Spleen
29	chr14:69202200-69203200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:69202200-69204400	Enhancers	Fetal Lung	lung
31	chr14:69202400-69203800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:69202400-69203800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:69202400-69204000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:69202400-69204000	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr14:69202400-69204000	Enhancers	Stomach Mucosa	stomach
36	chr14:69202400-69204200	Enhancers	Placenta	Placenta
37	chr14:69202400-69204400	Enhancers	Right Atrium	heart
38	chr14:69202400-69204400	Enhancers	Right Ventricle	heart
39	chr14:69202400-69206200	Enhancers	Ovary	ovary
40	chr14:69202600-69203400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr14:69202600-69203400	Weak transcription	Colonic Mucosa	Colon
42	chr14:69202600-69203600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr14:69202600-69203600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr14:69202600-69203600	Flanking Active TSS	HSMMtube	muscle
45	chr14:69202600-69203800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:69202600-69203800	Enhancers	NHDF-Ad	bronchial
47	chr14:69202600-69204400	Enhancers	Placenta Amnion	Placenta Amnion
48	chr14:69202600-69209000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr14:69202800-69203200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:69202800-69203200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast

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