Variant report

Variant	rs10143427
Chromosome Location	chr14:69197439-69197440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69196911..69199506-chr14:69233921..69236013,2	MCF-7	breast:
2	chr14:69196833..69200106-chr14:69259441..69263814,4	K562	blood:
3	chr14:69196700..69198365-chr14:69213161..69215430,2	K562	blood:
4	chr14:69195777..69198921-chr14:69260739..69263814,4	K562	blood:
5	chr14:69186666..69188197-chr14:69195401..69198346,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17106208	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs194784	1.00[CHB][hapmap]
rs56323038	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57148883	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74062913	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:69187400-69200000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:69187800-69199400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:69193000-69200800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr14:69194200-69199200	Enhancers	Fetal Muscle Leg	muscle
6	chr14:69194400-69198000	Enhancers	Primary B cells from peripheral blood	blood
7	chr14:69194600-69198400	Enhancers	Placenta	Placenta
8	chr14:69194600-69198400	Enhancers	Left Ventricle	heart
9	chr14:69194800-69199400	Enhancers	Fetal Heart	heart
10	chr14:69195200-69198400	Enhancers	Primary B cells from cord blood	blood
11	chr14:69195200-69201600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:69195400-69197600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr14:69195400-69199800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr14:69195600-69197600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr14:69195600-69198000	Enhancers	Primary hematopoietic stem cells	blood
16	chr14:69195600-69200200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:69195600-69202800	Weak transcription	Fetal Kidney	kidney
18	chr14:69196000-69197800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr14:69196000-69200800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr14:69196200-69198000	Enhancers	Right Atrium	heart
21	chr14:69196200-69200400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:69196400-69197800	Enhancers	Brain Germinal Matrix	brain
23	chr14:69196400-69198400	Enhancers	Right Ventricle	heart
24	chr14:69196400-69200800	Weak transcription	Small Intestine	intestine
25	chr14:69196400-69201600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:69196400-69203600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr14:69196600-69197800	Weak transcription	Fetal Intestine Large	intestine
28	chr14:69196600-69197800	Enhancers	Fetal Thymus	thymus
29	chr14:69196600-69198800	Enhancers	Fetal Lung	lung
30	chr14:69196600-69200200	Enhancers	Brain Hippocampus Middle	brain
31	chr14:69196600-69201000	Weak transcription	Fetal Intestine Small	intestine
32	chr14:69196600-69201000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:69196600-69203200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:69196800-69197600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr14:69196800-69197800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr14:69196800-69198200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr14:69196800-69198800	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr14:69196800-69199400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:69196800-69200600	Weak transcription	HUVEC	blood vessel
40	chr14:69196800-69201000	Weak transcription	K562	blood
41	chr14:69197000-69198200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr14:69197000-69198600	Enhancers	HSMMtube	muscle
43	chr14:69197000-69198800	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr14:69197000-69199000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:69197000-69199000	Enhancers	Fetal Stomach	stomach
46	chr14:69197000-69199200	Enhancers	HepG2	liver
47	chr14:69197000-69199400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:69197000-69200000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:69197000-69200000	Weak transcription	Brain Substantia Nigra	brain
50	chr14:69197200-69197600	Enhancers	Brain Inferior Temporal Lobe	brain

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