Variant report

Variant	rs17106213
Chromosome Location	chr14:69196548-69196549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69195838..69197369-chr14:69197618..69200440,2	K562	blood:
2	chr14:69195069..69196789-chr14:69199130..69200741,2	MCF-7	breast:
3	chr14:69195777..69198921-chr14:69260739..69263814,4	K562	blood:
4	chr14:69186666..69188197-chr14:69195401..69198346,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10143427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs194784	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs56323038	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57148883	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74062913	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:69187400-69200000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:69187800-69199400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:69193000-69200800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr14:69193800-69197400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:69194200-69196600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr14:69194200-69196800	Enhancers	HUVEC	blood vessel
8	chr14:69194200-69199200	Enhancers	Fetal Muscle Leg	muscle
9	chr14:69194400-69196600	Enhancers	Fetal Intestine Small	intestine
10	chr14:69194400-69196600	Enhancers	Stomach Mucosa	stomach
11	chr14:69194400-69198000	Enhancers	Primary B cells from peripheral blood	blood
12	chr14:69194600-69197000	Enhancers	Lung	lung
13	chr14:69194600-69198400	Enhancers	Placenta	Placenta
14	chr14:69194600-69198400	Enhancers	Left Ventricle	heart
15	chr14:69194800-69199400	Enhancers	Fetal Heart	heart
16	chr14:69195000-69196800	Enhancers	K562	blood
17	chr14:69195000-69197000	Weak transcription	Fetal Stomach	stomach
18	chr14:69195000-69197400	Weak transcription	Brain Anterior Caudate	brain
19	chr14:69195200-69197000	Enhancers	Spleen	Spleen
20	chr14:69195200-69198400	Enhancers	Primary B cells from cord blood	blood
21	chr14:69195200-69201600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:69195400-69196600	Weak transcription	Fetal Thymus	thymus
23	chr14:69195400-69197400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:69195400-69197400	Weak transcription	Adipose Nuclei	Adipose
25	chr14:69195400-69197600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr14:69195400-69199800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:69195600-69196600	Weak transcription	Brain Substantia Nigra	brain
28	chr14:69195600-69196600	Weak transcription	Fetal Lung	lung
29	chr14:69195600-69197200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr14:69195600-69197600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr14:69195600-69198000	Enhancers	Primary hematopoietic stem cells	blood
32	chr14:69195600-69200200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:69195600-69202800	Weak transcription	Fetal Kidney	kidney
34	chr14:69195800-69196800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr14:69195800-69197000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:69195800-69197200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr14:69196000-69197000	Weak transcription	HepG2	liver
38	chr14:69196000-69197800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr14:69196000-69200800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr14:69196200-69196600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:69196200-69196800	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr14:69196200-69196800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr14:69196200-69197400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:69196200-69198000	Enhancers	Right Atrium	heart
45	chr14:69196200-69200400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr14:69196400-69196600	Enhancers	Fetal Intestine Large	intestine
47	chr14:69196400-69196800	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr14:69196400-69197800	Enhancers	Brain Germinal Matrix	brain
49	chr14:69196400-69198400	Enhancers	Right Ventricle	heart
50	chr14:69196400-69200800	Weak transcription	Small Intestine	intestine

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