Variant report

Variant	rs17106454
Chromosome Location	chr5:146712252-146712253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11950394	1.00[MEX][hapmap]
rs11953018	1.00[MEX][hapmap]
rs11956835	1.00[MEX][hapmap]
rs7720075	1.00[MEX][hapmap]
rs7720384	1.00[MEX][hapmap]
rs7736889	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146703600-146716400	Weak transcription	Ovary	ovary
2	chr5:146707000-146716400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:146707400-146716400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:146707600-146725600	Weak transcription	Pancreas	Pancrea
5	chr5:146711400-146713000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:146711600-146712600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:146711600-146712800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:146711600-146712800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:146711600-146715200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:146711800-146712400	Weak transcription	Fetal Kidney	kidney
11	chr5:146711800-146713200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:146711800-146713600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:146711800-146715200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:146712000-146712600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:146712000-146712600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:146712000-146712600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:146712000-146712800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:146712000-146713200	Enhancers	Brain Germinal Matrix	brain
19	chr5:146712200-146712400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:146712200-146712400	Flanking Bivalent TSS/Enh	Pancreatic Islets	Pancreatic Islet
21	chr5:146712200-146712600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr5:146712200-146712600	Enhancers	Brain Substantia Nigra	brain

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