Variant report

Variant	rs17106685
Chromosome Location	chr14:78453172-78453173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78447123..78449153-chr14:78450860..78453226,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10134845	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12586144	1.00[EUR][1000 genomes]
rs12586190	1.00[EUR][1000 genomes]
rs17106712	0.89[ASN][1000 genomes]
rs17106733	0.92[ASN][1000 genomes]
rs17106741	0.92[ASN][1000 genomes]
rs73321008	1.00[EUR][1000 genomes]
rs73321032	1.00[EUR][1000 genomes]
rs73321033	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34345	chr14:78370455-78496587	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2757576	chr14:78379156-78502019	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759999	chr14:78379156-78502019	Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78447800-78457200	Weak transcription	Fetal Thymus	thymus
2	chr14:78451200-78455200	Enhancers	Brain Hippocampus Middle	brain
3	chr14:78451800-78454600	Weak transcription	HSMM	muscle
4	chr14:78452000-78453800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:78452000-78454200	Weak transcription	Brain Angular Gyrus	brain
6	chr14:78452000-78454400	Weak transcription	Adipose Nuclei	Adipose
7	chr14:78452000-78454400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:78452000-78454400	Weak transcription	NHLF	lung
9	chr14:78452000-78454600	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:78452000-78454800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:78452000-78455200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:78452000-78455200	Weak transcription	HSMMtube	muscle
13	chr14:78452000-78455400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:78452000-78455400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:78452000-78455400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:78452000-78455400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr14:78452000-78455400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr14:78452200-78453200	Weak transcription	Brain Substantia Nigra	brain
19	chr14:78452200-78453800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:78452200-78453800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:78452200-78454000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:78452200-78454400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:78452200-78454600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:78452200-78454600	Weak transcription	NH-A	brain
25	chr14:78452400-78457400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:78452600-78457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links