Variant report

Variant	rs17106741
Chromosome Location	chr14:78496448-78496449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10134845	0.85[ASN][1000 genomes]
rs17106685	0.92[ASN][1000 genomes]
rs17106712	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106733	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955567	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34345	chr14:78370455-78496587	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2757576	chr14:78379156-78502019	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759999	chr14:78379156-78502019	Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv902108	chr14:78459047-78541015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78494800-78496600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:78494800-78496600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:78494800-78496800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:78495000-78496800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:78495000-78496800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:78495000-78496800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:78495600-78496600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr14:78495600-78496600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:78495600-78496600	Enhancers	Fetal Brain Male	brain
10	chr14:78496000-78496600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr14:78496000-78496600	Active TSS	Fetal Brain Female	brain
12	chr14:78496200-78496600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
13	chr14:78496200-78496600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:78496200-78496600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr14:78496200-78497000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:78496400-78496600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr14:78496400-78496600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:78496400-78496600	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr14:78496400-78497000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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