Variant report

Variant	rs17106789
Chromosome Location	chr10:93356949-93356950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93353150..93355778-chr10:93356212..93359175,2	K562	blood:
2	chr10:93355565..93358601-chr10:93391118..93395265,4	MCF-7	breast:
3	chr10:93349706..93352465-chr10:93354064..93358504,5	K562	blood:
4	chr10:93168205..93170894-chr10:93355130..93357801,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73318259	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73318270	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7903829	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7911956	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
3	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine
4	chr10:93351400-93357200	Weak transcription	Lung	lung
5	chr10:93351800-93357200	Enhancers	Hela-S3	cervix
6	chr10:93351800-93359200	Enhancers	Fetal Intestine Large	intestine
7	chr10:93352400-93357200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:93353000-93360200	Enhancers	Fetal Heart	heart
9	chr10:93353200-93357200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:93353400-93357200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:93353600-93357200	Weak transcription	Placenta	Placenta
12	chr10:93353600-93357400	Weak transcription	Aorta	Aorta
13	chr10:93354600-93357000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:93354600-93357200	Weak transcription	Esophagus	oesophagus
15	chr10:93354600-93364800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:93355600-93358600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:93355600-93358600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:93355600-93359400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:93355800-93357200	Enhancers	Rectal Smooth Muscle	rectum
20	chr10:93355800-93358600	Enhancers	Fetal Kidney	kidney
21	chr10:93355800-93358800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:93355800-93358800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:93355800-93358800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr10:93355800-93359200	Enhancers	NHEK	skin
25	chr10:93355800-93359400	Enhancers	NHDF-Ad	bronchial
26	chr10:93355800-93361000	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:93356000-93357000	Enhancers	HSMMtube	muscle
28	chr10:93356000-93357200	Enhancers	Duodenum Mucosa	Duodenum
29	chr10:93356000-93358400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:93356000-93358600	Enhancers	Colon Smooth Muscle	Colon
31	chr10:93356000-93358800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:93356000-93358800	Enhancers	HSMM	muscle
33	chr10:93356000-93359200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:93356000-93360600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:93356200-93357200	Enhancers	Brain Hippocampus Middle	brain
36	chr10:93356200-93357200	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr10:93356200-93357800	Enhancers	Brain Germinal Matrix	brain
38	chr10:93356200-93358400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:93356200-93358400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr10:93356200-93358600	Enhancers	Stomach Smooth Muscle	stomach
41	chr10:93356200-93358800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:93356200-93358800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:93356200-93358800	Enhancers	NHLF	lung
44	chr10:93356200-93358800	Enhancers	Osteobl	bone
45	chr10:93356400-93357000	Enhancers	Brain Anterior Caudate	brain
46	chr10:93356400-93357000	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr10:93356400-93357400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr10:93356400-93357600	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr10:93356400-93357800	Enhancers	K562	blood
50	chr10:93356400-93358000	Enhancers	Brain Substantia Nigra	brain

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