Variant report

Variant	rs17106801
Chromosome Location	chr14:71950186-71950187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71947760..71950425-chr14:71957722..71959257,2	MCF-7	breast:
2	chr14:71949964..71951465-chr14:71958875..71960889,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17126107	0.85[AFR][1000 genomes]
rs4899395	1.00[AMR][1000 genomes]
rs4902930	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs4902932	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902934	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56979877	0.85[AFR][1000 genomes]
rs57912772	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58286010	1.00[AMR][1000 genomes]
rs58376573	1.00[AMR][1000 genomes]
rs59153212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59852557	0.93[AFR][1000 genomes]
rs60347165	1.00[AMR][1000 genomes]
rs60597274	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17106801	AHSP	trans	lymphoblastoid	seeQTL

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71929200-71964200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr14:71930200-71954200	Weak transcription	Gastric	stomach
3	chr14:71930200-71955600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:71935400-71980400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:71936400-71951400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:71939000-71950400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:71939000-71959800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:71939200-71955800	Weak transcription	NHLF	lung
9	chr14:71939800-71954200	Weak transcription	Small Intestine	intestine
10	chr14:71941200-71950400	Weak transcription	Spleen	Spleen
11	chr14:71941200-71950600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:71941200-71954200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:71941200-71954400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:71941400-71954200	Weak transcription	HMEC	breast
15	chr14:71941400-71954600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:71941600-71950200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:71941600-71954600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:71941600-71955400	Weak transcription	HSMMtube	muscle
19	chr14:71942000-71954600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr14:71942000-71964200	Weak transcription	Hela-S3	cervix
21	chr14:71943000-71955400	Weak transcription	HSMM	muscle
22	chr14:71943200-71950400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr14:71945600-71950200	Weak transcription	Primary B cells from cord blood	blood
24	chr14:71945600-71950400	Weak transcription	Pancreas	Pancrea
25	chr14:71945800-71956200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr14:71945800-71956400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:71946000-71950200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr14:71946000-71953000	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:71946000-71954200	Weak transcription	NHEK	skin
30	chr14:71946000-71954800	Weak transcription	Fetal Muscle Leg	muscle
31	chr14:71946000-71959800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:71946000-71963200	Weak transcription	Dnd41	blood
33	chr14:71946000-71995600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:71946600-71950400	Weak transcription	Fetal Thymus	thymus
35	chr14:71947000-71964600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr14:71947200-71950400	Weak transcription	Lung	lung
37	chr14:71947400-71952000	Enhancers	Brain Substantia Nigra	brain
38	chr14:71948200-71950400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr14:71948200-71950400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr14:71948200-71953200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:71948200-71953800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr14:71948200-71958600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr14:71948600-71950600	Enhancers	Osteobl	bone
44	chr14:71948600-71950800	Enhancers	Fetal Stomach	stomach
45	chr14:71948800-71950200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:71948800-71950200	Enhancers	NHDF-Ad	bronchial
47	chr14:71948800-71950400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:71948800-71950400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:71948800-71950400	Enhancers	Fetal Lung	lung
50	chr14:71948800-71950800	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links