Variant report

Variant	rs59852557
Chromosome Location	chr14:71857969-71857970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71786437..71789425-chr14:71855632..71858754,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction
ENSG00000259146	Chromatin interaction

rs_ID	r²[population]
rs17106801	0.93[AFR][1000 genomes]
rs17126107	0.87[AFR][1000 genomes]
rs4899395	0.83[AFR][1000 genomes]
rs4902930	0.83[AFR][1000 genomes]
rs4902932	0.98[AFR][1000 genomes]
rs4902934	0.93[AFR][1000 genomes]
rs56979877	0.87[AFR][1000 genomes]
rs57912772	0.98[AFR][1000 genomes]
rs58286010	0.83[AFR][1000 genomes]
rs58376573	0.83[AFR][1000 genomes]
rs59153212	0.93[AFR][1000 genomes]
rs60347165	0.83[AFR][1000 genomes]
rs60597274	0.89[AFR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71844800-71858600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr14:71845000-71865200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:71845800-71865200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:71847600-71867600	Weak transcription	Fetal Lung	lung
5	chr14:71847600-71869000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:71848600-71867000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:71849800-71872200	Weak transcription	Fetal Intestine Small	intestine
8	chr14:71850600-71861000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:71850800-71862000	Weak transcription	Aorta	Aorta
10	chr14:71851200-71860200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:71851200-71874200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:71851400-71878200	Weak transcription	Pancreas	Pancrea
13	chr14:71851600-71860800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:71851800-71858400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:71851800-71860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:71852000-71858600	Weak transcription	Spleen	Spleen
17	chr14:71852200-71860200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:71852200-71860800	Weak transcription	Osteobl	bone
19	chr14:71853000-71860400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:71853800-71866800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:71855600-71864400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr14:71855800-71861400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:71856000-71866000	Weak transcription	NH-A	brain
24	chr14:71856200-71861000	Weak transcription	NHEK	skin
25	chr14:71856200-71865000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr14:71856600-71860200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:71856600-71860400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr14:71856600-71865200	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:71856800-71860200	Weak transcription	Fetal Heart	heart
30	chr14:71857200-71861000	Enhancers	Primary B cells from peripheral blood	blood
31	chr14:71857600-71858600	Enhancers	GM12878-XiMat	blood
32	chr14:71857800-71858400	Weak transcription	Primary B cells from cord blood	blood

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