Variant report

Variant	rs17106908
Chromosome Location	chr10:93430112-93430113
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17106892	1.00[AMR][1000 genomes]
rs4477361	1.00[AMR][1000 genomes]
rs7069752	0.84[AMR][1000 genomes]
rs73322045	1.00[AMR][1000 genomes]
rs73323911	1.00[AMR][1000 genomes]
rs7914861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7915974	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948135	chr10:93423027-93430220	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93419200-93431400	Weak transcription	Psoas Muscle	Psoas
2	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:93425800-93432000	Weak transcription	Osteobl	bone
4	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:93427600-93431400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:93427600-93448800	Weak transcription	Liver	Liver
7	chr10:93428200-93431200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:93429000-93431000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:93429000-93431400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:93429200-93431800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:93429200-93431800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:93429400-93431200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:93429400-93431800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:93429800-93431600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr10:93430000-93430200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:93430000-93431400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:93430000-93431800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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