Variant report

Variant	rs7915974
Chromosome Location	chr10:93425792-93425793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11819558	0.92[ASN][1000 genomes]
rs11819574	0.92[ASN][1000 genomes]
rs17106864	0.89[ASN][1000 genomes]
rs17106868	0.89[ASN][1000 genomes]
rs17106892	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17106908	1.00[AMR][1000 genomes]
rs4477361	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7069752	0.84[AMR][1000 genomes]
rs7071622	0.89[ASN][1000 genomes]
rs73320191	0.89[ASN][1000 genomes]
rs73322045	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73323911	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7907539	0.92[ASN][1000 genomes]
rs7914861	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948135	chr10:93423027-93430220	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93419200-93431400	Weak transcription	Psoas Muscle	Psoas
2	chr10:93424200-93426000	Enhancers	NHDF-Ad	bronchial
3	chr10:93424600-93426800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:93425200-93426800	Weak transcription	Liver	Liver
6	chr10:93425600-93425800	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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