Variant report

Variant	rs7071622
Chromosome Location	chr10:93373841-93373842
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:
2	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
3	chr10:93362637..93365388-chr10:93371389..93374177,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786006	0.85[ASN][1000 genomes]
rs10881931	0.85[ASN][1000 genomes]
rs11186630	0.85[ASN][1000 genomes]
rs11819558	0.96[ASN][1000 genomes]
rs11819574	0.96[ASN][1000 genomes]
rs12354606	0.85[ASN][1000 genomes]
rs17106864	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106868	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106892	0.96[ASN][1000 genomes]
rs2242121	0.85[ASN][1000 genomes]
rs4477361	0.92[ASN][1000 genomes]
rs7069752	0.89[AMR][1000 genomes]
rs73320191	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73322045	0.96[ASN][1000 genomes]
rs73323911	0.89[ASN][1000 genomes]
rs7907539	0.96[ASN][1000 genomes]
rs7915974	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3341903	chr10:93373522-93376220	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:93369400-93378600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:93369400-93379200	Weak transcription	Liver	Liver
5	chr10:93369600-93387800	Weak transcription	Fetal Brain Male	brain
6	chr10:93370400-93374200	Enhancers	Fetal Heart	heart
7	chr10:93371200-93376800	Weak transcription	Spleen	Spleen
8	chr10:93371400-93374400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:93371400-93377000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93371400-93381400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:93371400-93383600	Weak transcription	Ovary	ovary
12	chr10:93371400-93383600	Weak transcription	Right Ventricle	heart
13	chr10:93371400-93386800	Weak transcription	Pancreas	Pancrea
14	chr10:93371600-93377000	Weak transcription	Esophagus	oesophagus
15	chr10:93372200-93374200	Enhancers	K562	blood
16	chr10:93372400-93374200	Enhancers	NHLF	lung
17	chr10:93372800-93374200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:93372800-93374200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr10:93372800-93374200	Flanking Active TSS	HSMMtube	muscle
20	chr10:93372800-93374400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:93372800-93374400	Enhancers	Fetal Stomach	stomach
22	chr10:93372800-93374400	Enhancers	HUVEC	blood vessel
23	chr10:93373000-93374000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:93373000-93374000	Enhancers	Left Ventricle	heart
25	chr10:93373000-93374200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:93373000-93374200	Enhancers	Colon Smooth Muscle	Colon
27	chr10:93373000-93374200	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr10:93373000-93374200	Enhancers	Rectal Smooth Muscle	rectum
29	chr10:93373000-93374200	Flanking Active TSS	Hela-S3	cervix
30	chr10:93373000-93374200	Flanking Active TSS	NH-A	brain
31	chr10:93373000-93374200	Flanking Active TSS	Osteobl	bone
32	chr10:93373000-93374400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:93373000-93374400	Enhancers	Stomach Mucosa	stomach
34	chr10:93373000-93374400	Enhancers	HMEC	breast
35	chr10:93373000-93374600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:93373000-93374600	Enhancers	Fetal Muscle Leg	muscle
37	chr10:93373200-93374000	Enhancers	Duodenum Mucosa	Duodenum
38	chr10:93373200-93374000	Flanking Active TSS	A549	lung
39	chr10:93373200-93374000	Flanking Active TSS	HSMM	muscle
40	chr10:93373200-93374200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr10:93373200-93374400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:93373200-93374600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:93373200-93374800	Enhancers	NHEK	skin
44	chr10:93373400-93374000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr10:93373400-93374000	Enhancers	Placenta Amnion	Placenta Amnion
46	chr10:93373400-93374200	Enhancers	Stomach Smooth Muscle	stomach
47	chr10:93373600-93374000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:93373600-93374000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:93373600-93374000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:93373600-93374200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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