Variant report

Variant	rs10881931
Chromosome Location	chr10:93373287-93373288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:
2	chr10:93348429..93351278-chr10:93370659..93373317,2	K562	blood:
3	chr10:93349778..93351711-chr10:93371480..93373317,2	K562	blood:
4	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
5	chr10:93362637..93365388-chr10:93371389..93374177,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786006	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186630	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186639	0.88[EUR][1000 genomes]
rs11819558	0.82[ASN][1000 genomes]
rs11819574	0.82[ASN][1000 genomes]
rs12354606	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106864	0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17106868	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17106892	0.82[ASN][1000 genomes]
rs2242121	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933678	0.98[EUR][1000 genomes]
rs4933679	0.97[EUR][1000 genomes]
rs4933688	0.81[EUR][1000 genomes]
rs7071622	0.85[ASN][1000 genomes]
rs73320191	0.85[ASN][1000 genomes]
rs73322045	0.82[ASN][1000 genomes]
rs7907539	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93367400-93373600	Enhancers	NHDF-Ad	bronchial
2	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
3	chr10:93368800-93373600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:93368800-93373800	Weak transcription	Small Intestine	intestine
5	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:93369200-93373600	Weak transcription	Colonic Mucosa	Colon
7	chr10:93369400-93373600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:93369400-93378600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:93369400-93379200	Weak transcription	Liver	Liver
10	chr10:93369600-93387800	Weak transcription	Fetal Brain Male	brain
11	chr10:93369800-93373400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:93370400-93374200	Enhancers	Fetal Heart	heart
13	chr10:93371000-93373400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:93371200-93376800	Weak transcription	Spleen	Spleen
15	chr10:93371400-93373800	Weak transcription	Psoas Muscle	Psoas
16	chr10:93371400-93374400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:93371400-93377000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:93371400-93381400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:93371400-93383600	Weak transcription	Ovary	ovary
20	chr10:93371400-93383600	Weak transcription	Right Ventricle	heart
21	chr10:93371400-93386800	Weak transcription	Pancreas	Pancrea
22	chr10:93371600-93373400	Weak transcription	Right Atrium	heart
23	chr10:93371600-93373600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr10:93371600-93377000	Weak transcription	Esophagus	oesophagus
25	chr10:93371800-93373400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:93371800-93373600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:93371800-93373600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:93371800-93373600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:93372200-93374200	Enhancers	K562	blood
30	chr10:93372400-93374200	Enhancers	NHLF	lung
31	chr10:93372800-93373600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:93372800-93374200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:93372800-93374200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr10:93372800-93374200	Flanking Active TSS	HSMMtube	muscle
35	chr10:93372800-93374400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:93372800-93374400	Enhancers	Fetal Stomach	stomach
37	chr10:93372800-93374400	Enhancers	HUVEC	blood vessel
38	chr10:93373000-93373600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:93373000-93374000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr10:93373000-93374000	Enhancers	Left Ventricle	heart
41	chr10:93373000-93374200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:93373000-93374200	Enhancers	Colon Smooth Muscle	Colon
43	chr10:93373000-93374200	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr10:93373000-93374200	Enhancers	Rectal Smooth Muscle	rectum
45	chr10:93373000-93374200	Flanking Active TSS	Hela-S3	cervix
46	chr10:93373000-93374200	Flanking Active TSS	NH-A	brain
47	chr10:93373000-93374200	Flanking Active TSS	Osteobl	bone
48	chr10:93373000-93374400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:93373000-93374400	Enhancers	Stomach Mucosa	stomach
50	chr10:93373000-93374400	Enhancers	HMEC	breast

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