Variant report

Variant	nsv551914
Chromosome Location	chr10:93365015-93384073
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:38)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93371223..93372891-chr10:93374209..93376452,2	K562	blood:
2	chr10:93379993..93381924-chr10:93383297..93385615,2	K562	blood:
3	chr10:93383247..93385576-chr10:93389131..93391344,3	MCF-7	breast:
4	chr10:93363309..93366261-chr10:93366366..93368768,3	K562	blood:
5	chr10:93381705..93385054-chr10:93391118..93393764,3	MCF-7	breast:
6	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
7	chr10:93368169..93371090-chr10:93379078..93381168,3	K562	blood:
8	chr10:93366313..93369162-chr10:93391370..93392912,2	MCF-7	breast:
9	chr10:93349778..93351711-chr10:93371480..93373317,2	K562	blood:
10	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
11	chr10:93377962..93379937-chr10:93386628..93388397,2	MCF-7	breast:
12	chr10:93368141..93371067-chr10:93374418..93377017,2	MCF-7	breast:
13	chr10:93375188..93376792-chr10:93378413..93380408,2	K562	blood:
14	chr10:93368141..93371067-chr10:93374418..93377017,2	MCF-7	breast:
15	chr10:93362637..93365388-chr10:93371389..93374177,2	MCF-7	breast:
16	chr10:93363309..93366261-chr10:93366366..93368768,3	K562	blood:
17	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
18	chr10:93383075..93384878-chr10:93391470..93393410,2	MCF-7	breast:
19	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:
20	chr10:93362637..93365388-chr10:93371389..93374177,2	MCF-7	breast:
21	chr10:93368169..93371090-chr10:93379550..93381168,2	K562	blood:
22	chr10:93346562..93349330-chr10:93365146..93366773,2	K562	blood:
23	chr10:93368169..93371090-chr10:93379550..93381168,2	K562	blood:
24	chr10:93368169..93371090-chr10:93379078..93381168,3	K562	blood:
25	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:
26	chr10:93365300..93367131-chr10:93369836..93371716,2	K562	blood:
27	chr10:93168617..93171307-chr10:93366868..93369856,2	K562	blood:
28	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:
29	chr10:93371223..93372891-chr10:93374209..93376452,2	K562	blood:
30	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
31	chr10:93379993..93381924-chr10:93383297..93385615,2	K562	blood:
32	chr10:93325037..93327659-chr10:93375294..93378275,2	K562	blood:
33	chr10:93365300..93367131-chr10:93369836..93371716,2	K562	blood:
34	chr10:93357670..93360937-chr10:93364618..93367584,3	K562	blood:
35	chr10:93368025..93369544-chr10:93384747..93386329,2	K562	blood:
36	chr10:93348429..93351278-chr10:93370659..93373317,2	K562	blood:
37	chr10:93375188..93376792-chr10:93378413..93380408,2	K562	blood:
38	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPP1R3C-2	chr10:93371108-93371217	NONHSAT015627

No data

Variant related genes	Relation type
ENSG00000119938	chromatin interactions
ENSG00000165338	chromatin interactions

Extended variants
information (count: 826 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:826 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7911956	chr10:93365015-93365016	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs2421617	chr10:93365037-93365038	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs552704302	chr10:93365053-93365054	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs183045449	chr10:93365135-93365136	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs2010902	chr10:93365142-93365143	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs555357793	chr10:93365171-93365172	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs187419394	chr10:93365225-93365226	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs543833507	chr10:93365231-93365232	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs564185317	chr10:93365284-93365285	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs555120297	chr10:93365324-93365325	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs540830665	chr10:93365332-93365333	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs558188468	chr10:93365372-93365373	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs529497828	chr10:93365389-93365390	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs724586	chr10:93365404-93365405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs563015947	chr10:93365409-93365410	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs150831467	chr10:93365415-93365416	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs551447714	chr10:93365419-93365420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs10509631	chr10:93365431-93365432	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs724585	chr10:93365444-93365445	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs11186624	chr10:93365474-93365475	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs544856036	chr10:93365529-93365530	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs139243677	chr10:93365562-93365563	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs535271171	chr10:93365597-93365598	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs1857059	chr10:93365615-93365616	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs575413485	chr10:93365631-93365632	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs73318294	chr10:93365641-93365642	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs557736749	chr10:93365670-93365671	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs577707468	chr10:93365689-93365690	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs149975252	chr10:93365813-93365814	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs560271952	chr10:93365819-93365820	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs563637974	chr10:93365837-93365838	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs56771415	chr10:93365885-93365886	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs7076799	chr10:93365896-93365897	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs531866906	chr10:93365907-93365908	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs551655770	chr10:93365910-93365911	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs11186625	chr10:93365911-93365912	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs527664486	chr10:93365915-93365916	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs140621905	chr10:93365923-93365924	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs140158603	chr10:93365990-93365991	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs567458289	chr10:93366013-93366014	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs376871381	chr10:93366019-93366020	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs535653925	chr10:93366020-93366021	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs373594567	chr10:93366021-93366022	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs59139525	chr10:93366034-93366035	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs4313484	chr10:93366061-93366062	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs371870638	chr10:93366065-93366066	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs4514319	chr10:93366068-93366069	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs116875001	chr10:93366076-93366077	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs143809470	chr10:93366115-93366116	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs61194276	chr10:93366234-93366235	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Melanoma	20877625	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:630 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93357600-93368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:93357800-93367600	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:93358400-93366400	Enhancers	Hela-S3	cervix
4	chr10:93358400-93367600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:93361000-93367400	Weak transcription	Psoas Muscle	Psoas
6	chr10:93361200-93366400	Enhancers	Fetal Heart	heart
7	chr10:93361800-93365600	Enhancers	HSMM	muscle
8	chr10:93362000-93365400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:93362000-93365400	Enhancers	HSMMtube	muscle
10	chr10:93362200-93365400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:93362200-93365400	Enhancers	Fetal Lung	lung
12	chr10:93362400-93365600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:93362400-93365600	Enhancers	Fetal Stomach	stomach
14	chr10:93362600-93365200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr10:93362800-93367600	Weak transcription	Right Ventricle	heart
16	chr10:93363000-93365400	Enhancers	NHEK	skin
17	chr10:93363200-93365600	Enhancers	NHLF	lung
18	chr10:93363200-93365800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:93363400-93365200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:93363400-93365200	Enhancers	Liver	Liver
21	chr10:93363400-93365400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:93363400-93365600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:93363400-93365600	Enhancers	Osteobl	bone
24	chr10:93363600-93365200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:93363600-93365600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:93363800-93365400	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr10:93363800-93365400	Enhancers	Rectal Smooth Muscle	rectum
28	chr10:93363800-93365400	Enhancers	HMEC	breast
29	chr10:93363800-93367400	Weak transcription	Pancreas	Pancrea
30	chr10:93363800-93367600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:93364000-93365400	Enhancers	Colon Smooth Muscle	Colon
32	chr10:93364000-93367400	Weak transcription	Aorta	Aorta
33	chr10:93364000-93367400	Weak transcription	Right Atrium	heart
34	chr10:93364000-93367800	Weak transcription	Stomach Mucosa	stomach
35	chr10:93364200-93367400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:93364400-93365400	Enhancers	Fetal Kidney	kidney
37	chr10:93364400-93367400	Weak transcription	Ovary	ovary
38	chr10:93364600-93365200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:93364600-93366200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:93364600-93368400	Weak transcription	Gastric	stomach
41	chr10:93364800-93365400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:93364800-93365600	Enhancers	NH-A	brain
43	chr10:93364800-93365800	Enhancers	NHDF-Ad	bronchial
44	chr10:93364800-93367400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:93364800-93367400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:93364800-93367400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:93365000-93365200	Weak transcription	A549	lung
48	chr10:93365000-93365600	Enhancers	HUVEC	blood vessel
49	chr10:93365200-93365400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:93365200-93365400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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