Variant report

Variant	rs17106864
Chromosome Location	chr10:93384073-93384074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93381705..93385054-chr10:93391118..93393764,3	MCF-7	breast:
2	chr10:93383075..93384878-chr10:93391470..93393410,2	MCF-7	breast:
3	chr10:93383247..93385576-chr10:93389131..93391344,3	MCF-7	breast:
4	chr10:93379993..93381924-chr10:93383297..93385615,2	K562	blood:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786006	0.85[ASN][1000 genomes]
rs10881931	0.85[ASN][1000 genomes]
rs11186630	0.85[ASN][1000 genomes]
rs11819558	0.96[ASN][1000 genomes]
rs11819574	0.96[ASN][1000 genomes]
rs12354606	0.85[ASN][1000 genomes]
rs17106868	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106892	0.96[ASN][1000 genomes]
rs2242121	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4477361	0.92[ASN][1000 genomes]
rs7069752	0.86[AMR][1000 genomes]
rs7071622	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73320191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73322045	0.96[ASN][1000 genomes]
rs73323911	0.89[ASN][1000 genomes]
rs7907539	0.96[ASN][1000 genomes]
rs7915974	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17106864	STEAP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:93369600-93387800	Weak transcription	Fetal Brain Male	brain
4	chr10:93371400-93386800	Weak transcription	Pancreas	Pancrea
5	chr10:93374000-93384800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:93374000-93386200	Weak transcription	Left Ventricle	heart
7	chr10:93374000-93387000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:93377400-93384200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:93377400-93386200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:93377400-93386800	Weak transcription	Stomach Mucosa	stomach
11	chr10:93377400-93387600	Weak transcription	Esophagus	oesophagus
12	chr10:93377400-93387600	Weak transcription	HSMM	muscle
13	chr10:93377400-93387800	Weak transcription	Psoas Muscle	Psoas
14	chr10:93377400-93389600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:93377600-93387600	Weak transcription	NHEK	skin
16	chr10:93377600-93387800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:93377600-93388000	Weak transcription	HSMMtube	muscle
18	chr10:93377800-93387600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:93378600-93389000	Weak transcription	Hela-S3	cervix
20	chr10:93380000-93385200	Weak transcription	Fetal Intestine Small	intestine
21	chr10:93382000-93387600	Weak transcription	HepG2	liver
22	chr10:93382200-93384800	Weak transcription	Fetal Stomach	stomach
23	chr10:93382200-93387800	Weak transcription	Lung	lung
24	chr10:93382600-93387600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:93382800-93386400	Weak transcription	Liver	Liver
26	chr10:93382800-93387600	Weak transcription	Brain Anterior Caudate	brain
27	chr10:93382800-93387600	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:93382800-93388200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:93383000-93384200	Strong transcription	Fetal Heart	heart
30	chr10:93383000-93385600	Strong transcription	Fetal Lung	lung
31	chr10:93383000-93388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:93383000-93388600	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:93383400-93385400	Strong transcription	Aorta	Aorta
34	chr10:93383400-93385400	Strong transcription	Fetal Muscle Leg	muscle
35	chr10:93383600-93384600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:93383600-93385200	Strong transcription	Fetal Intestine Large	intestine
37	chr10:93383600-93385200	Strong transcription	Right Ventricle	heart
38	chr10:93383600-93385400	Strong transcription	Ovary	ovary
39	chr10:93383600-93385400	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:93383600-93385600	Weak transcription	NHDF-Ad	bronchial
41	chr10:93383800-93384200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:93383800-93385200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:93383800-93385400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:93383800-93387600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:93383800-93387600	Weak transcription	Osteobl	bone
46	chr10:93383800-93388200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:93384000-93385000	Strong transcription	NHLF	lung
48	chr10:93384000-93386400	Strong transcription	Stomach Smooth Muscle	stomach
49	chr10:93384000-93388600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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